XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTGT
TTTTTTCTCCCATCACCTAAACAAAAGACAGCTTTGCATATAGCCCAGTT
TGCAAAAGTATTTGTAGGTTGTTGTGGCTATGGTATTTTGATAACTAGAG
AACAACAAAGCTGAAAAGAGGGCATGCTTGCTACAGAATGGAGGAAGACA
AAGTTTGGAATAATTCAAATCTCTAGAAATAAAATAAGATCATTATCTAT
GTTGAGATGACAAATCCTTTAATTAATTTTGATACTTAATTAAACTATAA
AGGCGGGTCATCTTGAAGGAATTTAAATTTATTAATTTAAGTGAAACTTA
CACAACCTATTTTCTAGCATTTGGAACTAAGATAGAGATAACTTGTATTA
AACTCAGACTTACAGAATTAGATAGTAAAGACTTGAATTTGTTGACTTAT
GTGGAAATGCATATAGGAAGAAATAGAGGAAAAGGAGCTTGAGATATATT
ATCATCAAACAGTGGCTCACTCCTCTTTACAGCATAACTCCCATTTCTAC
ATGCATTATTTCAAACAATATCAGGACAGAGGAGAGTGAGGTGAATTGAC
AGAGAATTAAAGAAGCTAGAAAGCAACTCAAAATGATGCAAGAGTTGTTG
CCTGCAAGTTGCCAATGGCTTTCCCTACAGCTGTTTTGGCACAACAATTC
TTGAAACAGAAATGAAATGTATATTAATTATACCATCATTAAGCTTATGA
AGAAAATCACTTTTTTTCCCTG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAAGAGAATTCCTGTACAAAACTCAAGTCCAAGTGG
ATCAAAGACCTCCACATAAAACCAGAAACACTTGTAGGCACCAGTGGCCA
TGGATTACTGGGTTCCTGAAAGGAAAGCTGGGCATGGATGGGAAGGAGAG
CAAGAGAAATAATGAGCCAAGGCAAAGTTCTCTGACCAAGGCTCAACTTT
AATTCTTCAGTCTGATTTTTAAAGGGGGAACTTCATCCCCCAATTATCCC
AGGATCTTTTTGCTTTGTCAGGATCTAGTCAGGAAAGGAAGCTCAGCAAC
TCAGCCAGTAGTGGCTTCTTGCAAGAAGCCACAGATGTAGCAGGAAAATA
GACTTTACTGATGTCAGAAGACTTTACCCTAGGTAGACTAGCTGACTGTG
GCAGACAAGGTCTATCAAATTCAGCCCACTCAAGGCTGTGGGGAGGGCAC
AAACACGGAATCTGATAGAAGAAAAAGTGGAGAATAGTCTTGAAAGCATT
GGCATAGAAGGCAGTTTCCTGAAGGAAACACCAATTGGTCAGGCAGCAGT
ATCAACAATTTCTACATGGAACCTCATGAAACTGAAAAGTTTCTATAAAG
AAAAGGACNATGACNATAGGGNCAAACAGCAGCCTATAGATTGGGAAAAT
CTTCACCATGTCTGATGGGAGACAATATTCCAAATATATAAAGAACTCTC
GAAACTGATATCACNATTCCCATCCATTAAA

Query= MSMg01no514_m21.b1 MSMg01no514_m21.b1 CHROMAT_FILE:
MSMg01no514_m21.b1 PHD_FILE: MSMg01no514_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:50 2005
         (620 letters)



>mm_chr1_106760863_106761882
          Length = 1020

 Score =  915 bits (473), Expect = 0.0
 Identities = 503/513 (98%), Gaps = 2/513 (0%)
 Strand = Plus / Minus

                                                                        
Query: 109  actagagaacaacaaagctgaaaagagggcatgcttgctacagaatggaggaagacaaag 168
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 actagagaacaataaagctgaaaagagggcatgcttgctacagaatggaggaagacaaag 958

                                                                        
Query: 169  tttggaataattcaaatctctagaaataaaataagatcattatctatgttgagatgac-a 227
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 957  tttggaataattcaaatctctagaaataaaataagatcattatctatgttgagatg-cta 899

                                                                        
Query: 228  aatcctttaattaattttgatacttaattaaactataaaggcgggtcatcttgaaggaat 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898  aatcctttaattaattttgatacttaattaaactataaaggcgggtcatcttgaaggaat 839

                                                                        
Query: 288  ttaaatttattaatttaagtgaaacttacacaacctattttctagcatttggaactaaga 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838  ttaaatttattaatttaagtgaaacttacacaacctattttctagcatttggaactaaga 779

                                                                        
Query: 348  tagagataacttgtattaaactcagacttacagaattagatagtaaagacttgaatttgt 407
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 778  tagagataacttgtattaaactcagacttacagaattagatagtaaaggcttgaatttgt 719

                                                                        
Query: 408  tgacttatgtggaaatgcatataggaagaaatagaggaaaaggagcttgagatatattat 467
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 718  tgacttatgtggaaatgcatataggaagaaatagaggaagaggagcttgagatatatcat 659

                                                                        
Query: 468  catcaaacagtggctcactcctctttacagcataactcccatttctacatgcattatttc 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658  catcaaacagtggctcactcctctttacagcataactcccatttctacatgcattatttc 599

                                                                        
Query: 528  aaacaatatcaggacagaggagagtgaggtgaattgacagagaattaaagaagctagaaa 587
            ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 598  aaataatatcaggacagaggagagtgaggtgaaatgacagagaattaaagaagcaagaaa 539

                                             
Query: 588  gcaactcaaaatgatgcaagagttgttgcctgc 620
            ||||||||||| |||||||||||||||||||||
Sbjct: 538  gcaactcaaaacgatgcaagagttgttgcctgc 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)