XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTC
TTTGTTCATTTCTGAGCCCCATTTTTTAATGGTGTTATTTGATTTTCTGA
AGTCCACCTTCTTGCGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACAGTGTCTTTTGCTTGCAGAAACTTTGGAGTTTCATTAGGTC
CCATTTGTAAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCA
GGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTT
AGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTTGCATTCTTC
TACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCT
TTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATA
GGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTT
GTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAG
TAAAGCTTTAGGTCTGGCATGTGGATTCCACCAGAAGTTCTTTTATCCTT
GAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTA

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTAAAACTTAAATTAAAAATAAACTA
ATAAAATTGAGAAGCAATTTGTCTAAAAACGTGAAAAGAAGCAAACGTAT
GCATTTGAAGCTAAAGAATTGAAGGGGGGTGGTTCTGGTAGTGAAGAAAT
ACTCAGTGAGTCAGAGGTGGCCAGAGCTATTAGCTGTGGAATGGACACAA
ACACAATAAAAAATTCTCTGCGATATTTTACTGGAATGCATTTTCATGTC
TTAAATATTGTCTATATTCAAAATATGATTTTTCCAACATTTCCATTTTC
AAAATAACATTTTATTGAATACTTTTTCTGGTATTGCATAGGAAAATTAT
CACTCATCAACTTTTCAAATTATGTATGTATCAGATTGTTATAAAAATTA
TGTCTTATTCCACTTGGTATCAACCATAATTTAAATAGTATTCTCTTCAG
GAAAATAAATATTATATTTCAAGCACATTGCTTCAAATAGGGCTTCATTC
AGAGACAGTCTGTACAGAAAACAAAAACAAAAAAACAAAAAAACAAACAA
ACAAATAAAACAAAAACAAAAACTGAGTTGAAATGAGGTCATTTGAAGAC
ACTTTTCCAGTATTTCTGGTGTGTATATAAAAGAGAATTTAGGACAGAAA
TACCTGAATAGGAAGAAAGATATGTGAAAAATAGGTTG

Query= MSMg01no514_o09.g1 MSMg01no514_o09.g1 CHROMAT_FILE:
MSMg01no514_o09.g1 PHD_FILE: MSMg01no514_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:58 2005
         (661 letters)



>mm_chr1_50444031_50445092
          Length = 1062

 Score =  890 bits (460), Expect = 0.0
 Identities = 487/498 (97%), Gaps = 7/498 (1%)
 Strand = Plus / Plus

                                                                       
Query: 170 tggacacaaacacaataaaaaattctctgcgatattttactggaatgcatttt-catgtc 228
           |||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||
Sbjct: 370 tggacacaaacacaataaaaaattctctgcaatattttactggaatccatttttcatgtc 429

                                                                       
Query: 229 ttaaatattgtctatattcaaaatatgatttttccaacatttccattttcaaaataacat 288
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 430 ttaaatattgtctatattcaaaatacgatttttccaacatttccattttcaaaataacat 489

                                                                       
Query: 289 tttattgaatactttttctggtattgcataggaaaattatcactcatcaacttttcaaat 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tttattgaatactttttctggtattgcataggaaaattatcactcatcaacttttcaaat 549

                                                                       
Query: 349 tatgtatgtatcagattgttataaaaattatgtcttattccacttggtatcaaccataat 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tatgtatgtatcagattgttataaaaattatgtcttattccacttggtatcaaccataat 609

                                                                       
Query: 409 ttaaatagtattctcttcaggaaaataaatattatatttcaagcacattgcttcaaatag 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttaaatagtattctcttcaggaaaataaatattatatttcaagcacattgcttcaaatag 669

                                                                       
Query: 469 ggcttcattcagagacagtctgtacagaaaacaaaaacaaaaaaacaaaaaa---acaaa 525
           |||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||
Sbjct: 670 ggcttcattcagagacagtctgtacagaaaacaaaaacaaaaaa-caaaaaacaaacaaa 728

                                                                       
Query: 526 caaacaaataaaa--caaaaacaaaaactgagttgaaatgaggtcatttgaagacacttt 583
           |||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 caaacaaaaaaaaaacaaaaacaaaaactgagttgaaatgaggtcatttgaagacacttt 788

                                                                       
Query: 584 tccagtatttctggtgtgtatataaaagagaatttaggacagaaatacctgaataggaag 643
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tccagtatttctggtgtgtatataaaagagaatttaggacagaaatacctgaataggaag 848

                             
Query: 644 aaagatatgtgaaaaata 661
           ||||||||||||||||||
Sbjct: 849 aaagatatgtgaaaaata 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1062
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1052
Effective search space:   684852
Effective search space used:   684852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)