BAC Information

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BAC

Clone NameMSMg01-515B10
Chromosome1 (Build37)
Map Location 156,121,708 - 156,193,759
singlet/doubletdoublet
Overlap genenone
Upstream geneLamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515B10.T7 (MSMg01no515_b10.b1)MSMg01-515B10.TJ (MSMg01no515_b10.g1)
ACCAG587414AG587415
length787795
length of high quality
(start - end)		629 (47 - 675)642 (79 - 720)
definitionCHROMAT_FILE: MSMg01no515_b10.b1 PHD_FILE: MSMg01no515_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:15 2005CHROMAT_FILE: MSMg01no515_b10.g1 PHD_FILE: MSMg01no515_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,193,177 - 156,193,759)(156,121,708 - 156,122,349)
sequence
CTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTTGGAGGTTCCTCAACAAACTCAAAATAGAACTGTATTATGATCAT
AATACCCCACTTCTGGGCATACATCCAAAGGGAAGAGAGTCAGCATACAA
ATAAATAACCTGCATGCCAGTGTTTATTGTGGCAGTATTTACAACAGTTA
AAATACACAAATTAGCCGAGGTACCTATCAACGGATGGAGTGCTTTCAGG
ATGGAGTATTAGTCAGTCCTAAAGAAGAATGACATCCTGGCAGTTGTGGC
AAAACTGATAGACAGGAATGCTATTAAATTAAATTAAATAATCCAGACAT
AGGAAAATGAGTGTCATGTGTTTTTATGTATGGAAGCAAACCACACAAAT
GCTGGTGTTAAAATAAATAAAATGGTGATTACTAATGGTCTGTGAAGGAT
GTGAGAGGTTTGGAAAGATGGAACATATTTACTGGATGTAATCAATCCAT
GTTAAATATTTTCCTGGAAACATTTATGGACTCCATTAGCATATAAAACA
AATATTTTTTAAGAAAATGATGTCTTTGGGGATAGAGAGATGATTCAGAA
CTTAAGAGAACTTATTGCTTTTGTTCAGTACCCACATGGTGGCCTATACC
ATCCATAATTCCAGTTTTATGGGATCCAACAAGATCTGACATCTCTGAGT
ACCANGCACACATGGTGTGCACATGCATGCAAGTAAAGCCCTCNCACACA
TAAATAAAAGAAGTATATCTAANAGAATTAATAGAAA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATAAAGGAGTTCAGGACATA
CATAATTGGCTTTAAAGTAGCTCTAATTATTCTGTTGAGGGAATTGAAAA
GTAAGGGATAGTGGGAAAAAACTAGGTAATATTTAAAAATTAACATAATA
CAACACATCTGCACTTTATGCTTAAATGAGATTAGATACACCTGAGCTGA
ACAGTAGATAGGACAAGCATCAAAGGTAGACAAATATCAAGGGATAATGA
TGAAACCAGAACAATGAGGAGTCACATGGTCCTGGTGAAGGTCTAAGAGG
GATGTAACTACAGTCCAGAAAGAAAACGAGATCAGTTGCAGAAGTGGTAT
TTGATATTTGGCTGATCATTTCTCCAAAGCTAGAGAAAGACCTTGAGCCA
CATTTTGAGGAAGTAATATGAACTTAAGCTACATTAAGAGCTGCAGACAG
GAACCTCAAAATAATTTTGCCAAAAGAGAATAATGAGAATCTTGACAGGA
AGCAGTGTGGAAAAATATCAAGGGAAGGAAGGATTGCAGACTGTATTGCA
CTGTGAACAATAACTTTCATGACAAAAGCATGACTAAGATCTAATGCAAA
CAGGATGCTTGAAATAGATTTTAACATACATGACAGATGTATGTTAAATG
TATGTATGGGCATCATTCACAGATAAACGTGCACACCAGATTATCTTATT
GATGGCATANTAAGGTACTCCCCACATTGGTCAAACTCACTAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_b10.b1 MSMg01no515_b10.b1 CHROMAT_FILE:
MSMg01no515_b10.b1 PHD_FILE: MSMg01no515_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:15 2005
         (629 letters)



>mm_chr1_156192731_156193759
          Length = 1029

 Score = 1127 bits (583), Expect = 0.0
 Identities = 583/583 (100%)
 Strand = Plus / Minus

                                                                        
Query: 47   atgatcataataccccacttctgggcatacatccaaagggaagagagtcagcatacaaat 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 atgatcataataccccacttctgggcatacatccaaagggaagagagtcagcatacaaat 970

                                                                        
Query: 107  aaataacctgcatgccagtgtttattgtggcagtatttacaacagttaaaatacacaaat 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  aaataacctgcatgccagtgtttattgtggcagtatttacaacagttaaaatacacaaat 910

                                                                        
Query: 167  tagccgaggtacctatcaacggatggagtgctttcaggatggagtattagtcagtcctaa 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  tagccgaggtacctatcaacggatggagtgctttcaggatggagtattagtcagtcctaa 850

                                                                        
Query: 227  agaagaatgacatcctggcagttgtggcaaaactgatagacaggaatgctattaaattaa 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  agaagaatgacatcctggcagttgtggcaaaactgatagacaggaatgctattaaattaa 790

                                                                        
Query: 287  attaaataatccagacataggaaaatgagtgtcatgtgtttttatgtatggaagcaaacc 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789  attaaataatccagacataggaaaatgagtgtcatgtgtttttatgtatggaagcaaacc 730

                                                                        
Query: 347  acacaaatgctggtgttaaaataaataaaatggtgattactaatggtctgtgaaggatgt 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  acacaaatgctggtgttaaaataaataaaatggtgattactaatggtctgtgaaggatgt 670

                                                                        
Query: 407  gagaggtttggaaagatggaacatatttactggatgtaatcaatccatgttaaatatttt 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  gagaggtttggaaagatggaacatatttactggatgtaatcaatccatgttaaatatttt 610

                                                                        
Query: 467  cctggaaacatttatggactccattagcatataaaacaaatattttttaagaaaatgatg 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  cctggaaacatttatggactccattagcatataaaacaaatattttttaagaaaatgatg 550

                                                                        
Query: 527  tctttggggatagagagatgattcagaacttaagagaacttattgcttttgttcagtacc 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549  tctttggggatagagagatgattcagaacttaagagaacttattgcttttgttcagtacc 490

                                                       
Query: 587  cacatggtggcctataccatccataattccagttttatgggat 629
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489  cacatggtggcctataccatccataattccagttttatgggat 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_b10.g1 MSMg01no515_b10.g1 CHROMAT_FILE:
MSMg01no515_b10.g1 PHD_FILE: MSMg01no515_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:15 2005
         (642 letters)



>mm_chr1_156121508_156122549
          Length = 1042

 Score = 1241 bits (642), Expect = 0.0
 Identities = 642/642 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agataaaggagttcaggacatacataattggctttaaagtagctctaattattctgttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agataaaggagttcaggacatacataattggctttaaagtagctctaattattctgttga 260

                                                                       
Query: 61  gggaattgaaaagtaagggatagtgggaaaaaactaggtaatatttaaaaattaacataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaattgaaaagtaagggatagtgggaaaaaactaggtaatatttaaaaattaacataa 320

                                                                       
Query: 121 tacaacacatctgcactttatgcttaaatgagattagatacacctgagctgaacagtaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaacacatctgcactttatgcttaaatgagattagatacacctgagctgaacagtaga 380

                                                                       
Query: 181 taggacaagcatcaaaggtagacaaatatcaagggataatgatgaaaccagaacaatgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggacaagcatcaaaggtagacaaatatcaagggataatgatgaaaccagaacaatgag 440

                                                                       
Query: 241 gagtcacatggtcctggtgaaggtctaagagggatgtaactacagtccagaaagaaaacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtcacatggtcctggtgaaggtctaagagggatgtaactacagtccagaaagaaaacg 500

                                                                       
Query: 301 agatcagttgcagaagtggtatttgatatttggctgatcatttctccaaagctagagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatcagttgcagaagtggtatttgatatttggctgatcatttctccaaagctagagaaa 560

                                                                       
Query: 361 gaccttgagccacattttgaggaagtaatatgaacttaagctacattaagagctgcagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaccttgagccacattttgaggaagtaatatgaacttaagctacattaagagctgcagac 620

                                                                       
Query: 421 aggaacctcaaaataattttgccaaaagagaataatgagaatcttgacaggaagcagtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggaacctcaaaataattttgccaaaagagaataatgagaatcttgacaggaagcagtgt 680

                                                                       
Query: 481 ggaaaaatatcaagggaaggaaggattgcagactgtattgcactgtgaacaataactttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaaaaatatcaagggaaggaaggattgcagactgtattgcactgtgaacaataactttc 740

                                                                       
Query: 541 atgacaaaagcatgactaagatctaatgcaaacaggatgcttgaaatagattttaacata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgacaaaagcatgactaagatctaatgcaaacaggatgcttgaaatagattttaacata 800

                                                     
Query: 601 catgacagatgtatgttaaatgtatgtatgggcatcattcac 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catgacagatgtatgttaaatgtatgtatgggcatcattcac 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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