Query= MSMg01no515_j20.b1 MSMg01no515_j20.b1 CHROMAT_FILE:
MSMg01no515_j20.b1 PHD_FILE: MSMg01no515_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:00 2005
(627 letters)
>mm_chr1_181039188_181040214
Length = 1027
Score = 1162 bits (601), Expect = 0.0
Identities = 619/625 (99%), Gaps = 2/625 (0%)
Strand = Plus / Plus
Query: 1 tctctaatcattcttactgaaattttacaaagtttctaaatgtgtttttgtgtgcatggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctaatcattcttactgaaattttacaaagtttctaaatgtgtttttgtgtgcatggt 260
Query: 61 gtgcaccccccaccccttgtgcgtagtgcggtatgggttgggtggacagtatgggtatgt 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gtgcaccccccaccccttgtgcgtagtgtggtatgggttgggtggacagtatgggtatgt 320
Query: 121 gatagtcaaatgtttcttatccttcccaagtgggcatttaccaacgttggttaactgtga 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gatagtcaaatgtttcttatccttcccaagtgggcatttaccaacgctggttaactgtga 380
Query: 181 ttgctgcctccttcccttaaccagcccaggacaccatccaag-gaagatggaggaggcag 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ttgctgcctccttcccttaaccagcccaggacaccatccaagagaagatggaggaggcag 440
Query: 240 tgaggaatagccacaggaaagggtaagaaatggtagaggaagttacttcagactcccctg 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 tgaggaatagccacagggaagggtaagaaatggtagaggaagttacttcagactccc-tg 499
Query: 300 tcaatccaccacccatccctgtcactcctgaaagcatccctttctgactgtctctatcgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcaatccaccacccatccctgtcactcctgaaagcatccctttctgactgtctctatcgc 559
Query: 360 tcttgcttgtcatcatctctggcctgcagttttacgtttctctagctccattcatcccaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcttgcttgtcatcatctctggcctgcagttttacgtttctctagctccattcatcccaa 619
Query: 420 cctagcctttaaactgccaccagataaatatttcttaagaatgggttgagtttttcaaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cctagcctttaaactgccaccagataaatatttcttaagaatgggttgagtttttcaaag 679
Query: 480 agaaatatgagttctgcccagcgctacagcataaagacaaaatacttgggtgtgatggga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agaaatatgagttctgcccagcgctacagcataaagacaaaatacttgggtgtgatggga 739
Query: 540 aagtccctgcagaacctgttcatagcccatctttccactgaaccgaacactcactacagt 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aagtccctgcagaacctgttcgtagcccatctttccactgaaccgaacactcactacagt 799
Query: 600 tctctgtggtctggcctctctgtca 624
|||||||||||||||||||||||||
Sbjct: 800 tctctgtggtctggcctctctgtca 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_j20.g1 MSMg01no515_j20.g1 CHROMAT_FILE:
MSMg01no515_j20.g1 PHD_FILE: MSMg01no515_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:00 2005
(508 letters)
>mm_chr1_181159204_181160107
Length = 904
Score = 727 bits (376), Expect = 0.0
Identities = 418/436 (95%), Gaps = 8/436 (1%)
Strand = Plus / Minus
Query: 75 agctattttcttgagacaggctattagtttgaaactgtgaggtctgctgactttttatca 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agctattttcttgagacaggctattagtttgaaactgtgaggtctgctgactttttatca 439
Query: 135 ccaccaagtctctggggtgggggtcagcaggtttccttctgcaatctccaaacagctaga 194
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 438 ccaccaggtctctggggtgggggtcagcagctttccttctgcaatctccaaacagctaga 379
Query: 195 cttgaagcttagtttagggccttgtttttcttggggggggggggagg--cctttagttaa 252
||||||||| |||||||||||||||||||||| |||||| || |||||||||||
Sbjct: 378 cttgaagctcagtttagggccttgtttttctttgggggg------ggtccctttagttaa 325
Query: 253 ctgtaaccaaccttcagcaggctcagatgccaactcagcaaagagtaggttcctctctgg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgtaaccaaccttcagcaggctcagatgccaactcagcaaagagtaggttcctctctgg 265
Query: 313 tgttctgacctgtgagttcttcttgcccccccggtccctgaacttttagcttcatctcct 372
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 264 tgttctgacctgtgagttcttcttgccttcttggtccctgaacttttagcttcatctcct 205
Query: 373 tatttcagacactccatctatctccacctggcttgctcctccctgcggagtgctctggga 432
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 tatttcagacactccatctatctccacctggcttgctcctccctgccgagtgctctggga 145
Query: 433 aagctcacagtgtgtcagctggaggtctgcactgcctgtttcccagtgaccactgtcctt 492
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 aagctcacagtgtgccagctggaggtctgcactgcctgtttcccagtgaccactgtcctt 85
Query: 493 gttcaatgtcttgaga 508
||||||||||||||||
Sbjct: 84 gttcaatgtcttgaga 69
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 904
Length adjustment: 10
Effective length of query: 498
Effective length of database: 894
Effective search space: 445212
Effective search space used: 445212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
