TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGGAAT
TCACTTGGGAGTTTCTCATCTTTTGTGCACTGATTAGAGAATGTCTGACA
CCTTGGTGCTTCACAGACCGTGCCTTCGACTACGATTTGTAGCGATCAAA
GGTCTGCCACTCCGGCAGAATCATTACATCTTTCACAGTTTACAGAGCCG
CCTACTGAACTTGGAGAGCGTGTCTCGGTCACAGTTCTCCTTTCTCTTAG
GTGGTCCTCCAGGAAACTCAGGATCCATGCCTCGTGCTCCAGATCTACGG
ATCTGCGTATCTACGGGACAAGCTATGTTTGAGGGCTTACTTGTTAGGAC
CACGGCATTGTCTGAAGGTGAAATGGATAGCTCTGCAACGTCCTCTTCAT
TCTTCACGGGTGAGTAGCGCACCAAGAGGTTGGTCAGCTCGATGGACGGA
GGCGGGGCCCAAGTGACCCGCATCGTGTCTGGACCGATATTGGTGAATCG
CAGATCCGTGGGAGGAGGGACAGCTGATATCAAATAAGGAGGATTGAGTT
AATGCGATTTTAAAGTCAAAGCTAAAAAAAAAATAGCTGAAAAGGTAAAA
ACCAGTATTTCATGCAGAAAAGATACAGTTACAACCATGCAAACTGGCTA
ATCTAATCTAATCTAAATCATGACACGCTACTGTTATAAAAATAAACATA
ACACTATAGAGAACACTGTTAGGGCCCTTTAACCTTTTCTGCCATGATTC
ATGCATTTTAAAAGAATTTTAGTCTACTN

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCTTGGAGGATTTTACCTTTGATGAG
TATGAAGTGTCCCTCCTTGTCTTTTTTGATAACTTTGGGTTGGAAGTCGA
TTTTATCCGATATTAAAATGGCTACTCCAGCTTGTTTCTTCAGTCCATTT
GCTTGGAAAATTGTTTTCCAGCCTTTCACTCTGAGGTAGTGTCTGTCTTT
TTCCCTGAGATGGGTTTCCTGTAAGCAGCAGAATGTTGGGTCCTGTTTGT
GTAGCCAGTCTGTTAGTCTATGTCTTTTTATTGGGGAATTGAGTCCATTG
ATATTAAGAGATATTAAGGAAAAGTAATTGTTGCTCCCTTTTATTTTTGT
TGTTAGAGTGGCATTCTGTTCTTGTGGCTGTCTTCTTTTTGGTTTGTTGA
ATGATTACTTTCTTGGTTGTTCTAGGGCGTGATTTCCATCCTTGTATTGC
TTCTTTTCTGTTATTATCCTTTGAAGGGCTGGATTCGTGGAAAGATATTG
TGTGAATTTGGTTTTGTCGTGGAATACTTTGGTTTCTCCATCTATGGTAA
TTGAGAGTTTGGCCGGGTATAGTAGCCTGGGCTGGCATTTGTGTTCTCTT
AGTGTCTGTATAACATCTGTCCAGGCTCTTCTGGCTTTCATAGTCTCTGG
TGAAAAGTCTGGTGTAATTCTGATAGGCCTTCCTTTATATGTTACTTGAC
CTTTCTCCCTTACTGCTTTTAATATTN

Query= MSMg01no515_k02.b1 MSMg01no515_k02.b1 CHROMAT_FILE:
MSMg01no515_k02.b1 PHD_FILE: MSMg01no515_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:01 2005
         (597 letters)



>mm_chr1_71658545_71659546
          Length = 1002

 Score = 1091 bits (564), Expect = 0.0
 Identities = 592/604 (98%), Gaps = 9/604 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcacttgggagtttctc--atcttttgtgcactgattagagaatgtctgacacctt 58
           |||||||||||||||  || |  |||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcacttgggag--tcacgtatcttttgtgcactgattagagaatgtctgacacctt 258

                                                                       
Query: 59  ggtgcttcacagaccgtgccttcgactacgatttgtagcgatcaaaggtctgccactccg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggtgcttcacagaccgtgccttcgactacgatttgtagcgatcaaaggtctgccactccg 318

                                                                       
Query: 119 gcagaatcattacatctttcacagtttacagagccgcctactgaacttggagagcgtg-- 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 319 gcagaatcattacatctttcacagtttacagagccgcctactgaacttggagagcgtgtc 378

                                                                       
Query: 177 tctcggtcacagttctcctttctcttaggtggtcctccagg-aaactcaggatccatgcc 235
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 379 tctcggtcacagttctcctttctcttaggtggtcctccaggaaaactcaggatccatgcc 438

                                                                       
Query: 236 tcgtgctccagatctacggatctgcgtatctacgggacaagctatgtttgagggcttact 295
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttgtgctccagatctacggatctgcgtatctacgggacaagctatgtttgagggcttact 498

                                                                       
Query: 296 tgttaggaccacggcattgtctgaaggtgaaatggatagctctgcaacgtcctcttcatt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgttaggaccacggcattgtctgaaggtgaaatggatagctctgcaacgtcctcttcatt 558

                                                                       
Query: 356 cttcacgggtgagtagcgcaccaagaggttggtcagctcgatggacggaggcggggccca 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cttcacgggtgagtagcgcaccaagaggttggtcagctcgatggacggaggcggggccca 618

                                                                       
Query: 416 agtgacccgcatcgtgtctggaccgatattggtgaatcgcagatccgtgggaggagggac 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agtgacccgcatcgtgtctggaccgatattggtgaatcgcagatccgtgggaggagggac 678

                                                                       
Query: 476 agctgatatcaaataaggaggattgagttaatgcgattttaaagtcaaagctaaaaaaaa 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agctgatatcaaataaggaggattgagttaatgcgattttaaagtcaaagctaaaaaaaa 738

                                                                       
Query: 536 aa--tagctgaaaaggtaaaaaccagtatttcatgcagaaaagatacagttacaaccatg 593
           ||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 739 aaaatagctgaaaaggtaaaaaccagtatttcatgcagaaaagaaacagttacaaccatg 798

               
Query: 594 caaa 597
           ||||
Sbjct: 799 caaa 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 1002
Length adjustment: 10
Effective length of query: 587
Effective length of database: 992
Effective search space:   582304
Effective search space used:   582304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)