Query= MSMg01no515_l06.b1 MSMg01no515_l06.b1 CHROMAT_FILE:
MSMg01no515_l06.b1 PHD_FILE: MSMg01no515_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:08 2005
(738 letters)
>mm_chr1_48954977_48956114
Length = 1138
Score = 532 bits (275), Expect = e-155
Identities = 299/309 (96%), Gaps = 7/309 (2%)
Strand = Plus / Minus
Query: 5 gaattcacattaatcagcatctcagttccct-tcagtttccttatcataaaatatcaaca 63
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 703 gaattcacattaatcagcatctcagtt-cctctcagtttccttatcataaaatatcaaca 645
Query: 64 acagcaatactttgcatacttttttcatgaaaatttctaa----taaaaattatttatat 119
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 644 acagcaatactttgcatacttttttcatgaaaatttccaatatgtaaaaattatttatat 585
Query: 120 aacacctatgaaataataatacatgtcaaaatataaccattcttataattttataataat 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 584 aacacctatgaaataataatacatgtcaaaatataa-cattcttataattttataataat 526
Query: 180 atggtaaaaattttatacaacttactttaatgcaatttctatatggaaatgaatctactg 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 atggcaaaaattttatacaacttactttaatgcaatttctatatggaaatgaatctactg 466
Query: 240 tgttttattgaacagggagaacttaatgaatgttagatagaaaagaatataaaccaatca 299
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 465 tgttttattgaacagggagaacttaatgaatgttagaaagaaaagaatataaaccaatca 406
Query: 300 acaactcat 308
|||||||||
Sbjct: 405 acaactcat 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 738
Length of database: 1138
Length adjustment: 10
Effective length of query: 728
Effective length of database: 1128
Effective search space: 821184
Effective search space used: 821184
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no515_l06.g1 MSMg01no515_l06.g1 CHROMAT_FILE:
MSMg01no515_l06.g1 PHD_FILE: MSMg01no515_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:08 2005
(617 letters)
>mm_chr1_48907805_48908821
Length = 1017
Score = 1110 bits (574), Expect = 0.0
Identities = 607/618 (98%), Gaps = 2/618 (0%)
Strand = Plus / Plus
Query: 1 ttctcagtagagaatgaataatgtaaaatgtttgtgatagcagaggcttatcataatgaa 60
||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 201 ttctcagtagagactgaataatgtaaaatgtttgtgataccagaggtttatcataatgaa 260
Query: 61 ctccagtggggatttatatagaggcaaatacaaagtaactgggaagtcaattccaacgtg 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ttccagtggggatttatatagaggcaaatacaaagtgactgggaagtcaattccaacgtg 320
Query: 121 tttgtcatgtggtataaattcattcttttctgcc-cccactcagtatgtttatccaccca 179
|||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 321 tttgtcatgtgggataaattcattcttttct-cctcccactcagtatgtttatccaccca 379
Query: 180 ctacatgtttttacaacagtaaactgaataacagccttgcaatgtttcatttttaggaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctacatgtttttacaacagtaaactgaataacagccttgcaatgtttcatttttaggaag 439
Query: 240 aggctcattttaaaaagaaagaatcttgaaatagcatatcaccaattatccaagtaaaat 299
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 440 aggctcattttaagaagaaagaatcttgaaataacatatcaccaattatccaagtaaaat 499
Query: 300 atagtattttcttgatttcaaacttgatcttttattactctgtacaacatatatgtctat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atagtattttcttgatttcaaacttgatcttttattactctgtacaacatatatgtctat 559
Query: 360 aaaactttttgattcctcaagacctaacaaccaactccataataatcccggcacatataa 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaatctttttgattcctcaagacctaacaaccaactccataataatcccggcacatataa 619
Query: 420 gtctaacactgtataatcagttaaccagtactgttaagataaaccgatttaatcacccta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtctaacactgtataatcagttaaccagtactgttaagataaaccgatttaatcacccta 679
Query: 480 tctttaagaaaaagagcaacaaaatactaactcacttccattaaaagttacttatgcccc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctttaagaaaaagagcaacaaaatactaactcacttccattaaaagttacttatgcccc 739
Query: 540 tcaaagttaaaaagacactttcaaagctgattatactttttccactatagctttattctt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcaaagttaaaaagacactttcaaagctgattatactttttccactatagctttattctt 799
Query: 600 tgtcttgtgtttttcctt 617
||||||||||||||||||
Sbjct: 800 tgtcttgtgtttttcctt 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
