CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCAGCTTGATTAGGTAATCTAAATTGTTGTTGTTAGATGGCAGA
GTGACACTGGTGATCAGTGGTCTACATTTCTATGTCACCAAAGTTCAATA
ATGTTATAAAATAGTGCTGTCCAGGGTAGGTAGCCCATTCTGAGAGAAGG
TATTCCCCATTTTGTGATTATTCCCTGGCTATTCTTTGGAAGAGTGTTTC
ATGACCTTGATCTGGATTTTATGGTCTCTTCCTAGCACTGATGTCTTATG
ACCTAGCTTCTAGAACTTAAGGCCTTTTCCTACAGCTGGTGTCTTAAGGC
CATTTTTTAAGTCAGGCCTGGTTCTCAAAATGAAGACAAATGAGGTTTAT
ACTACTCTTTCAAAATTAGGTTTTATCTTGCCAAATATCTCTAGCTAGTG
TCAAACTGACAAAAATCCTAACCAGGGAAATTAGCCTCTTCATTTTAAGA
GAAAAGCCAAGATAAAGTATTTTGAAATTTGATCTAGGAATATAACATGT
GTAGGCCATGACTGTCTTTTAAAAGGAGTATATAGAGTGATTTATGTTTT
ATTGTTCACGATTAAAATTTCACCTGCCATATTATGTATGATATTAAATT
TCAACAGTAAATTATGGCAATTTATTTCAACATATAAAATTATCATTTAA
AAATTAAGGCAACTTGATCCAAGACTGCAAAAGATATTGAACCAATTGAA
GCAATTTAAAAGGTTA

CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGGGCTCTTCTATATGATGAGCT
TCCAGCTGTTCCTGGACTAGCTGTACTAATGCCTGTAGTTTTTCTGTTGT
CATAGACCATTGATCTATATAAATGGGTTGGACCTTTGTGGAAAGGCTGT
TGGTTTCTTGGCAGCAGTGGTTCCTTGGGGTAGGGCTAAATTCTCAGCCT
CTGTTATATCTTGTTTGTGGTCAGCTTGGACAGTCTGTAACTGCCTTTGA
TAGCATTCTCTAACTAATTTGAAATTTTTATTAGGAGCCTAATGGGTTTC
ATGGCTAGACACTGAAACTGAGATGATATTAATTTGGGTTTTCTTCTGCT
GTAATAGATCTCTTTCCCATAAGTTAATGGCTATATTAACCATGTATGGT
CTCAATTTCCCTACATGGCCTTCTGTTTCTACCCATTTAAGCCAACTGCT
ATGTTGTTTTATGAGGGATAAGGTTCCAAATCCTTGAAATTTTATGTCTA
CTTCTTGAAGTGGCCAACTTTCAGGCCAAGATTTTAGAGAGATAATGGTA
ACATCTGCTCCAGTGTCAACCATTGCTTCAATCTCAATGTTGTTTACTAG
TATTCTTAGTATTGCCCTTTGATTCTCTATAGAAGTTTGCCAAAATAGTA
ATTTTTGGTTCCCTTTATGGCCTCTTTTATTGCCTTTCTTACTGCTGAAT
CTGATATATTCCTN

Query= MSMg01no515_m12.b1 MSMg01no515_m12.b1 CHROMAT_FILE:
MSMg01no515_m12.b1 PHD_FILE: MSMg01no515_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:14 2005
         (713 letters)



>mm_chr1_113657057_113658169
          Length = 1113

 Score = 1193 bits (617), Expect = 0.0
 Identities = 686/709 (96%), Gaps = 4/709 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccagcttga-ttaggtaatctaaattgttgttgttagatggcagagtgacact 63
           ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccagca-gaattaggtaatctaaattgttgttgttagatggcagagtgacact 263

                                                                       
Query: 64  ggtgatcagtggtctacatttctatgtcaccaaagttcaataatgttataaaatagtgct 123
           |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 264 ggtgatcagtggtctacatttctatgtcacaaaagttcaataatgtgataaaatagtgct 323

                                                                       
Query: 124 gtccagggtaggtagcccattctgagagaaggtatt-ccccattttgtgattattccctg 182
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 gtccagggtaggtagcccattctgagagaaggtatttccccattttgtgattattccctg 383

                                                                       
Query: 183 gctattctttggaagagtgtttcatgaccttgatctggattttatggtctcttcctagca 242
           ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 gctattctttggaggagtgtttcatgaccttgatctgtattttatggtctcttcctagca 443

                                                                       
Query: 243 ctgatgtcttatgacctagcttctagaacttaaggccttttcctacagctggtgtcttaa 302
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 444 ctgatgtcttatgacctagcttctagaacttatggccttttcctacaggtggtgtcttaa 503

                                                                       
Query: 303 ggccattttttaagtcaggcctggttctcaaaatgaagacaaatgaggtttatactactc 362
           |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 ggccatttttgaagtcaggcctggttctcaaaatgaagacaaatgcggtttatactactc 563

                                                                       
Query: 363 tttcaaaattaggttttatcttgccaaatatctctagctagtgtcaaactgacaaaaatc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttcaaaattaggttttatcttgccaaatatctctagctagtgtcaaactgacaaaaatc 623

                                                                       
Query: 423 ctaaccagggaaattagcctcttcattttaagagaaaagccaagataaagtattttgaaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctaaccagggaaattagcctcttcattttaagagaaaagccaagataaagtattttgaaa 683

                                                                       
Query: 483 tttgatctaggaatataacatgtgtaggccatgactgtcttttaaaaggagtatatagag 542
            |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 684 cttgatctaggaatataacatgtataggccatggctgtcttttaaaaggagtatatagag 743

                                                                       
Query: 543 tgatttatgttttattgttcacgattaaaatttcacctgccatattatgtatgatattaa 602
           ||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgatttatggttt-ttgttcactattaaaatttcacctgccatattatgtatgatattaa 802

                                                                       
Query: 603 atttcaacagtaaattatggcaatttatttcaacatataaaattatcatttaaaaattaa 662
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 803 atttcaacagtaaattatggcaatttatttcaacatataaaattatgatttaaaaactaa 862

                                                            
Query: 663 ggcaacttgatccaagactgcaaaagatattgaaccaattgaagcaatt 711
            ||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 863 agcaacttgatccaagactgtaaaagatattgaactaattgaagcaatt 911


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space:   775409
Effective search space used:   775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)