NAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATTCTTTTTATCATGTTTCTGTTATATCAATTTTGGAAATA
TGTACAAATGTGAATTGAATGTGTGTTCTTTTAAGTTTAAGTGTTTTACA
TTTGTGTATTTCTAGATTTCTTTCACTTCGAGTTTTTCTTAAGAATATGA
AAGCGTTATCCTTTATTGTCAAGAGTATTACAATTGACATATACACTTAT
AAGTTATTTGCTGATCTGAGCACTACAGGGTCTCTTAAGTAAGATTGCAT
ACACATCCCTGTGTTTGCATAGTTTCCAGGGTGTTCTATCACGTGCTCAG
CATGTGTAATGGACAACCTCTTAGCACTCATTCTATTTAGAAAGCATTCT
GTTGGCCTTTCTGCAGTTGTTATTACCTGTGTCCTGTTGGAATGATTGCT
GGTTGGGATGACTCACAACCATCTGAGATCAGAGTCTGCCTTCCCAGGAT
TCAGTCATTATCTTCATGATAGGATTCATTTCTTTAAACACTCAGAGCAA
TAATGCTCTCTTTATGTAAGCCTGACATTTTTTTGCCCTCAAGTAACATC
AATCAATCTCTTAGAGATATATTGAAAAAGTCGATAGCTGAGAATGCTAT
TCAGGGGTAAAAATAATTTAAAACTTCCCATTTGGTCCAGTATGTAGACA
GTCTTTNTAATGGTACACATCTTCTAATACAAATATTACATGGGTAAAGT
GGACTCCTTTCGCAGTTTTAAATN

NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCCATACATAAACATGAT
AAAAGCAATCTACAGCAAACCAGTAGCCAACACCAAAGTAAAAGGTGAGA
ACCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCATTT
TCTCCCTACCTCCTCAACATAGTATTTGAAGTTATAGCCAGAGCAATTAG
ACAACAAAAGGAGATCAAGAGGATACAAATTTGAAAGGCAGAAGTCAAAA
TATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAAT
TCCACCAAATAATTCCTAAACCTGATAAACAGCTTCAATGCAGTAGCTGG
ATATAAAATTAACTCAAACAAGTCAATAGCCTTTCTGTACACAAAGGATA
AACAGGCTGAGAAAGAAATTAGGGAAACAACCCCTTCTCAATAGTCACAA
ATATCATAAAATACCTTGGCATTACTCTAACTAAGGAAGTGAAAGATCTG
TATGATAAGAACTTCAAGTATCTAAAGAAAGAAATTAATGAAGATCTCTG
AAGATAGAAAGATCTCTAATGCTCATGGATTGGCAGGATCAATATAGTAA
ACATGGCTGTCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCACATC
AAAATTCCAACTCAATTCTTCAACGAAGTAGAAAGGGCAATTTACAAATC
GCCTGGAATAACAAAAAACCT

Query= MSMg01no515_n17.b1 MSMg01no515_n17.b1 CHROMAT_FILE:
MSMg01no515_n17.b1 PHD_FILE: MSMg01no515_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:21 2005
         (640 letters)



>mm_chr1_28930002_28931042
          Length = 1041

 Score = 1147 bits (593), Expect = 0.0
 Identities = 626/637 (98%), Gaps = 1/637 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctattctttttatcatgtttctgttatatcaattttggaaatatgtacaaatgtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaattctattctttttatcatgtttctgttatatcaattttggaaatatgtacaaatgtg 782

                                                                       
Query: 65  aattgaatgtgtgttcttttaagtttaagtgttttacatttgtgtatttctagatttctt 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cattgaatgtgtgttcttttaagtttaagtgttttacatttgtgtatttctagatttctt 722

                                                                       
Query: 125 tcactt-cgagtttttcttaagaatatgaaagcgttatcctttattgtcaagagtattac 183
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 721 tcacttccgagtttttcttaagaatatgaaagcattatcctttattgtcaagagtattac 662

                                                                       
Query: 184 aattgacatatacacttataagttatttgctgatctgagcactacagggtctcttaagta 243
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 661 aattgacatatacacttataagttatttgctgatctgagcattacagggtctcttaagta 602

                                                                       
Query: 244 agattgcatacacatccctgtgtttgcatagtttccagggtgttctatcacgtgctcagc 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 601 agattgcatacacatccctgtgtttgcatagcttccagggtgttctatcacgtgctcagc 542

                                                                       
Query: 304 atgtgtaatggacaacctcttagcactcattctatttagaaagcattctgttggcctttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atgtgtaatggacaacctcttagcactcattctatttagaaagcattctgttggcctttc 482

                                                                       
Query: 364 tgcagttgttattacctgtgtcctgttggaatgattgctggttgggatgactcacaacca 423
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 481 tgcagttgttattacctgtgtcctgttggaatgattcctggttgggatgactcaaaacca 422

                                                                       
Query: 424 tctgagatcagagtctgccttcccaggattcagtcattatcttcatgataggattcattt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tctgagatcagagtctgccttcccaggattcagtcattatcttcatgataggattcattt 362

                                                                       
Query: 484 ctttaaacactcagagcaataatgctctctttatgtaagcctgacatttttttgccctca 543
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 361 ctttaaacactcagagcaataatgctgtctttatgtaagcctgacaattttttgccctca 302

                                                                       
Query: 544 agtaacatcaatcaatctcttagagatatattgaaaaagtcgatagctgagaatgctatt 603
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 301 agtaacatcaatcaatctcttagagatatattgaaaaagttgatagctgagaatgatatt 242

                                                
Query: 604 caggggtaaaaataatttaaaacttcccatttggtcc 640
           |||||||||||||||||||||||||||||||||||||
Sbjct: 241 caggggtaaaaataatttaaaacttcccatttggtcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1041
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1031
Effective search space:   649530
Effective search space used:   649530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)