AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGATGTAGAATTATTGGTTAGTTCTCCAGCACCATGTCTGACTGAG
CGCCACCATGCTTCCCACCAGGGAAACAATGGACTAAACCTCTGACACTG
TAAGCAAGCCCCAACTATATGTTCTCCTTTATAAGAATTGTCATGGTCAT
GATGTCTCTTCATAGCAACAGAGCACTAAGACAACTTGTCTGGAGGACAG
GGCCTACCTCTTATCTATAATCCCAACATCTATACAGTACTGAATAATAT
AGGATTTTTAAATGAATAGTAGAATATTTGTATTAATGTTTAATTACAAA
GACTTAGATAAAGGTTAAACGGCTTACCTTTTGCACATCAGAGTCTTCTA
AATAAATGTACCTATACACATTATATTCACATTCGGGGAGCAGATCATAC
ATTAATCTTGCATTAGGGGCACTATACATGCTGTTGATGTAATTTAATAT
TTCAGTCACAATCTGAGGTTCCCCTATTTTGAAATCATATAATTAAGTAT
ATGTTCATCTTGGGGTCGAGAATTGACCCAGTGGGTTAAGAGCATGCACT
ACTCCTATAGAGGACCAAGTTCATTTCCCAGTCCACATCCAGCTCCTCAC
AACTTCCCGTCACTCCAACTCCAGAAGATATGGTACCTCTTCTGGACTCC
ACAGGCTGCACTGGTGTGCACAGACCCACACACAGATACATTCACATTAT
TAAAAATAAATTTCAACGTTCATTTTCGAAGTCATTAA

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGATGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAG
TGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGC
TAAACACATGAAACTCAAGGAGAATGAAGACTGAAGTGTGGACACTATGC
CCCTCCTTAGATTTGGGAAAAAACACCCATGGA

Query= MSMg01no515_p02.b1 MSMg01no515_p02.b1 CHROMAT_FILE:
MSMg01no515_p02.b1 PHD_FILE: MSMg01no515_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:28 2005
         (714 letters)



>mm_chr1_121742612_121743725
          Length = 1114

 Score = 1338 bits (692), Expect = 0.0
 Identities = 704/708 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagatgtagaattattggttagttctccagcaccatgtctgactgagcgccacca 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 902 gaattcagatgtagaattattggttagttctccagcatcatgtctgactgagcaccacca 843

                                                                       
Query: 65  tgcttcccaccagggaaacaatggactaaacctctgacactgtaagcaagccccaactat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 tgcttcccaccagggaaacaatggactaaacctctgacactgtaagcaagccccaactat 783

                                                                       
Query: 125 atgttctcctttataagaattgtcatggtcatgatgtctcttcatagcaacagagcacta 184
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 acgttctcctttataagaattgtcatggtcatgatgtctcttcatagcaacagagcacta 723

                                                                       
Query: 185 agacaacttgtctggaggacagggcctacctcttatctataatcccaacatctatacagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 agacaacttgtctggaggacagggcctacctcttatctataatcccaacatctatacagt 663

                                                                       
Query: 245 actgaataatataggatttttaaatgaatagtagaatatttgtattaatgtttaattaca 304
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 actgaataatatgggatttttaaatgaatagtagaatatttgtattaatgtttaattaca 603

                                                                       
Query: 305 aagacttagataaaggttaaacggcttaccttttgcacatcagagtcttctaaataaatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aagacttagataaaggttaaacggcttaccttttgcacatcagagtcttctaaataaatg 543

                                                                       
Query: 365 tacctatacacattatattcacattcggggagcagatcatacattaatcttgcattaggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tacctatacacattatattcacattcggggagcagatcatacattaatcttgcattaggg 483

                                                                       
Query: 425 gcactatacatgctgttgatgtaatttaatatttcagtcacaatctgaggttcccctatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gcactatacatgctgttgatgtaatttaatatttcagtcacaatctgaggttcccctatt 423

                                                                       
Query: 485 ttgaaatcatataattaagtatatgttcatcttggggtcgagaattgacccagtgggtta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttgaaatcatataattaagtatatgttcatcttggggtcgagaattgacccagtgggtta 363

                                                                       
Query: 545 agagcatgcactactcctatagaggaccaagttcatttcccagtccacatccagctcctc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agagcatgcactactcctatagaggaccaagttcatttcccagtccacatccagctcctc 303

                                                                       
Query: 605 acaacttcccgtcactccaactccagaagatatggtacctcttctggactccacaggctg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acaacttcccgtcactccaactccagaagatatggtacctcttctggactccacaggctg 243

                                                           
Query: 665 cactggtgtgcacagacccacacacagatacattcacattattaaaaa 712
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cactggtgtgcacagacccacacacagatacattcacattattaaaaa 195


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space:   777216
Effective search space used:   777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)