BAC Information

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BAC

Clone NameMSMg01-516B14
Chromosome1 (Build37)
Map Location 152,977,148 - 153,111,075
singlet/doubletdoublet
Overlap geneLOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286
Upstream geneLOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370
Downstream geneIvns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516B14.T7 (MSMg01no516_b14.b1)MSMg01-516B14.TJ (MSMg01no516_b14.g1)
ACCAG588177AG588178
length758752
length of high quality
(start - end)		625 (52 - 676)560 (79 - 638)
definitionCHROMAT_FILE: MSMg01no516_b14.b1 PHD_FILE: MSMg01no516_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:41 2005CHROMAT_FILE: MSMg01no516_b14.g1 PHD_FILE: MSMg01no516_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,977,148 - 152,977,768)(153,110,517 - 153,111,075)
sequence
NNNAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTTGTTTTTTAAGCGTGGCGTACATGTTTCTTACAAAT
GTCCTACTTTGACCAGGTGAACCCTTTCAAGCTCTTTATTGTCACATATC
AGTCACCTACAAAACACTTGTGAGAGATGTTTACAGAGCAGCTCGGCCCC
TCCACAAAGCTTCAAATCTGAGTTGCTGAGATAAAGCCACTCACATTTGC
TGAACAGAGTTTTCAAATTCTTTTCCTGAAGTGAGCTAAAAATAGTTGCT
AGAGATAGGAAGAGACAGGCAGGGTGATAATTTTAGTGACTATGTGCCAG
GACTGTGTAAAAATTTAACCTAGGTTTTAGCCTTACGAATGTTAAGGTTA
AATCGAATTTAATAATTTACCATGATTAACCATTTGCTTTAATCATTAGA
GAGACAAATTTCAAGAAGAGAATGTGCTTGCTCATCACTTCTATATAGAA
GAAAGGGTGATCTCTTCATTCAGCTTTATACTCACTGGGGGGTCATAAGA
CTTAGTTACATTTAAAGTCCCCATGAGGTATCTTTCAGATGTAATATCTC
AGCACTAAAGCTACCCTAATTCTCACACAATTCTAATGCTTTCCTAAATT
TCAAGATTGATCAAGCAACTCCAGATACTGTGGGTGATCTCTGCTCCCAA
GAAAATGTCTTTAGAAACGACCTCATCCCTGAAAGGTCTCTTAACTTGCN
ATGGCTTC

NNNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAATCCCACTGCTTTTGATGA
TGGCCTGTTGTTATAGGGAACTGTGAGCAAAATAAACCCTCTCCTCCCCA
AGTGGCTTTTGGTCCTGGCCATTTCATCGCAGCAACAGTAACCATAACTA
AACACCTAGCGTGAGTAAGACTCCAACTTCTATTCCTAGCACTGAAAAAC
AGTTTGTTTTAAAGATGAAAGGATCTTGCCCTGTGATACTATTTCCTTAG
ATACCACAGTTCTGGAAATGGTATAAGCCTTAGTAACCTCCTGCTAAGTG
AGAACTGTCACCCCTTCCCAAACTGAGTCACTAAAAACCAGCCATCTTTT
ATTACTGCTCCAGAGTCCACAGGTCAGCGGGTCCTTCCACTCGTAGGAGG
ACCAGGCTTACATTACCAGGCTTGCCTATGGACTACGGTCAAGAGGCAGA
GTGTCTGCTTGTTGGTTTGTTTTGGCGGAGCCTTAATCATATGCCTGCTG
GTTAGTTGATTGTAGGTTGGGACAGTGAGGTTGTCTGGGCTGTGTATTGC
TCATCGGTCCTGAGACTTATTTATTACAGCAGCAGTAAGAGGCTGAGAGG
GAGAGTGGAACAGAGGTGTGCAGGGCTCCTGGGAAATATTTCTCCCTCTA
CACTCTGTTTATGAAAGAAAACAAAAAACAAAAAACAAAAAAACCTCACA
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_b14.b1 MSMg01no516_b14.b1 CHROMAT_FILE:
MSMg01no516_b14.b1 PHD_FILE: MSMg01no516_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:41 2005
         (625 letters)



>mm_chr1_152976944_152977968
          Length = 1025

 Score = 1193 bits (617), Expect = 0.0
 Identities = 620/621 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttgttttttaagcgtggcgtacatgtttcttacaaatgtcctactttgacca 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcttttgttttttaagcgtggcgtacatgtttcttacaaatgtcctactttgacga 264

                                                                       
Query: 65  ggtgaaccctttcaagctctttattgtcacatatcagtcacctacaaaacacttgtgaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtgaaccctttcaagctctttattgtcacatatcagtcacctacaaaacacttgtgaga 324

                                                                       
Query: 125 gatgtttacagagcagctcggcccctccacaaagcttcaaatctgagttgctgagataaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatgtttacagagcagctcggcccctccacaaagcttcaaatctgagttgctgagataaa 384

                                                                       
Query: 185 gccactcacatttgctgaacagagttttcaaattcttttcctgaagtgagctaaaaatag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccactcacatttgctgaacagagttttcaaattcttttcctgaagtgagctaaaaatag 444

                                                                       
Query: 245 ttgctagagataggaagagacaggcagggtgataattttagtgactatgtgccaggactg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgctagagataggaagagacaggcagggtgataattttagtgactatgtgccaggactg 504

                                                                       
Query: 305 tgtaaaaatttaacctaggttttagccttacgaatgttaaggttaaatcgaatttaataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtaaaaatttaacctaggttttagccttacgaatgttaaggttaaatcgaatttaataa 564

                                                                       
Query: 365 tttaccatgattaaccatttgctttaatcattagagagacaaatttcaagaagagaatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttaccatgattaaccatttgctttaatcattagagagacaaatttcaagaagagaatgt 624

                                                                       
Query: 425 gcttgctcatcacttctatatagaagaaagggtgatctcttcattcagctttatactcac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcttgctcatcacttctatatagaagaaagggtgatctcttcattcagctttatactcac 684

                                                                       
Query: 485 tggggggtcataagacttagttacatttaaagtccccatgaggtatctttcagatgtaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggggggtcataagacttagttacatttaaagtccccatgaggtatctttcagatgtaat 744

                                                                       
Query: 545 atctcagcactaaagctaccctaattctcacacaattctaatgctttcctaaatttcaag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atctcagcactaaagctaccctaattctcacacaattctaatgctttcctaaatttcaag 804

                                
Query: 605 attgatcaagcaactccagat 625
           |||||||||||||||||||||
Sbjct: 805 attgatcaagcaactccagat 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_b14.g1 MSMg01no516_b14.g1 CHROMAT_FILE:
MSMg01no516_b14.g1 PHD_FILE: MSMg01no516_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:41 2005
         (560 letters)



>mm_chr1_153110194_153111153
          Length = 960

 Score = 1073 bits (555), Expect = 0.0
 Identities = 558/559 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaatcccactgcttttgatgatggcctgttgttatagggaactgtgagcaaaataaacc 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 882 ctaatcccactgcttttgatgatgacctgttgttatagggaactgtgagcaaaataaacc 823

                                                                       
Query: 61  ctctcctccccaagtggcttttggtcctggccatttcatcgcagcaacagtaaccataac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ctctcctccccaagtggcttttggtcctggccatttcatcgcagcaacagtaaccataac 763

                                                                       
Query: 121 taaacacctagcgtgagtaagactccaacttctattcctagcactgaaaaacagtttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 taaacacctagcgtgagtaagactccaacttctattcctagcactgaaaaacagtttgtt 703

                                                                       
Query: 181 ttaaagatgaaaggatcttgccctgtgatactatttccttagataccacagttctggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ttaaagatgaaaggatcttgccctgtgatactatttccttagataccacagttctggaaa 643

                                                                       
Query: 241 tggtataagccttagtaacctcctgctaagtgagaactgtcaccccttcccaaactgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tggtataagccttagtaacctcctgctaagtgagaactgtcaccccttcccaaactgagt 583

                                                                       
Query: 301 cactaaaaaccagccatcttttattactgctccagagtccacaggtcagcgggtccttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cactaaaaaccagccatcttttattactgctccagagtccacaggtcagcgggtccttcc 523

                                                                       
Query: 361 actcgtaggaggaccaggcttacattaccaggcttgcctatggactacggtcaagaggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 actcgtaggaggaccaggcttacattaccaggcttgcctatggactacggtcaagaggca 463

                                                                       
Query: 421 gagtgtctgcttgttggtttgttttggcggagccttaatcatatgcctgctggttagttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gagtgtctgcttgttggtttgttttggcggagccttaatcatatgcctgctggttagttg 403

                                                                       
Query: 481 attgtaggttgggacagtgaggttgtctgggctgtgtattgctcatcggtcctgagactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 attgtaggttgggacagtgaggttgtctgggctgtgtattgctcatcggtcctgagactt 343

                              
Query: 541 atttattacagcagcagta 559
           |||||||||||||||||||
Sbjct: 342 atttattacagcagcagta 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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