TCTTGGTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAGGACAGCAAAGGCTACACAGAGAAAGCCTATCTCG
GGGGGGGGGGGGGAGATCTGAATTAAGTTACTCACTTTAAAAAGAAGTAG
CTCCCTATGGGGTTGCAAACCCTTTCAGTATCAACCAACCAGATCCCCCA
GAGCTCCCAGGAACTAAGCCACCAACCAAGGAGTACACATGGCTCCAGAT
GCATGTGTAGCAGAGGATGGCCTTGTCAGGCATCAATGGAAGGATAGGTC
CTTGGTCCTATGAAGGTTTGACAGATGCCCCAGTGTAGGAGAGTTGAGGG
CAGGGAGGCAGGAATGGGTGGTTGGTTGGAGGAACACCCACATAGAAGCA
GGGGGAGGGGGAGGGGGCTTCAGGGTGGCTGGGAAAGGGGATAACACTTG
AAATATAAGTAAAGAAAATAGCTAACTATATATGTATAAAGAAGTAGCTA
TACTATGGAAAAGGAGAACCAAATTGCTCTCCACACTAACACTTACCTCC
AAAACTACCACACCGGGAAAGAATATGAATGGTTTAGGCTTAGTAATTGC
AGAACACTTTATAACAATCTAAGAAAGTAAAGTGGGACTCTCATATATAT
ATGGCAACCTCAAGCTAAGGGGAGCAAAATACCAGTGTTTCTCAAGGACT
GAGGGGCGTATGGTAGGCACGCTGACATAAGGGATTATTAATTGAATCTG

NTTTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACACAACCAGGATCAC
AGGAGGGACAGGCTCCAGTCAGAAACAGCAAAAGCAGATAGCACTAAAGA
TAACCAGATGGCAAGGGACAAGCACAAGAACATAAGCAACAGAAACCAAG
GCTACTTGGCATTATCAGAACCCAGTTCTCCCACCCCAGTGAGCCCTGGA
TACCCAACACACCAGAAAAGTAAGACTCTGATTTAAAATCATAGACTGAG
AAAGAAATTAGAGAAATGACACCCTTCACAATAGTCACAAATAATATAAA
GTATCTCGGTGTGACTGTAACGAAGCAAGTGAAAGATCTGTATGACAAGA
ACTTCACGTCTCTGAAGAAAGAAATTGAAGAAAACCTTCAGAAGATGGAA
AGATCTCCCATGCTCATGGATTGGCGGGATTAATATACTAAAAATGGCCA
TCTTGTTGAAAGAAAGCTACAGATTCAATGCAATCCCCATCAAAATTCCA
ACTCAATTCTTCATAGAGTTAGAAAGAACCATTCAACATGTAGAAGAATG
CGAATTGATCTATTCTCCCCCTACAAAGGTCAGGTCCAAGTGGATGGAGG
ACCTCCACATAAAACCAGATACACTGAATCTAATAGAAGAGAAAGTGGGG
AAAAGTCTCAAATACATAGGCACAGGGGAAACAGAACACCAATGTCTTAT
G

Query= MSMg01no516_d14.b1 MSMg01no516_d14.b1 CHROMAT_FILE:
MSMg01no516_d14.b1 PHD_FILE: MSMg01no516_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:52 2005
         (569 letters)



>mm_chr1_54192035_54193003
          Length = 969

 Score = 1067 bits (552), Expect = 0.0
 Identities = 563/568 (99%), Gaps = 3/568 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacagcaaaggctacacagagaaagcctatctcgggggggggggggg---a 61
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 202 gaattccaggatagcaaaggctacacagagaaagcctatctcggggggggggggggggaa 261

                                                                       
Query: 62  gatctgaattaagttactcactttaaaaagaagtagctccctatggggttgcaaaccctt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gatctgaattaagttactcactttaaaaagaagtagctccctatggggttgcaaaccctt 321

                                                                       
Query: 122 tcagtatcaaccaaccagatcccccagagctcccaggaactaagccaccaaccaaggagt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcagtatcaaccaaccagatcccccagagctcccaggaactaagccaccaaccaaggagt 381

                                                                       
Query: 182 acacatggctccagatgcatgtgtagcagaggatggccttgtcaggcatcaatggaagga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acacatggctccagatgcatgtgtagcagaggatggccttgtcaggcatcaatggaagga 441

                                                                       
Query: 242 taggtccttggtcctatgaaggtttgacagatgccccagtgtaggagagttgagggcagg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taggtccttggtcctatgaaggtttgacagatgccccagtgtaggagagttgagggcagg 501

                                                                       
Query: 302 gaggcaggaatgggtggttggttggaggaacacccacatagaagcagggggagggggagg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaggcaggaatgggtggttggttggaggaacacccacatagaagcagggggagggggagg 561

                                                                       
Query: 362 gggcttcagggtggctgggaaaggggataacacttgaaatataagtaaagaaaatagcta 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gggcttcagggtggctgggaaaggggataacacttgaaatataagtaaagaaaatagcta 621

                                                                       
Query: 422 actatatatgtataaagaagtagctatactatggaaaaggagaaccaaattgctctccac 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 actatatatgtataaagaagtagctatactatggaaaaggagaaccaaattgctctccac 681

                                                                       
Query: 482 actaacacttacctccaaaactaccacaccgggaaagaatatgaatggtttaggcttagt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 actaacacttacctccaaaactaccacaccgggaaagaatatgaatggtttaggcttagt 741

                                       
Query: 542 aattgcagaacactttataacaatctaa 569
           ||||||||||||||||| ||||||||||
Sbjct: 742 aattgcagaacactttagaacaatctaa 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)