NNNNCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACAGAAGTAGAAAGGAGGACCCTGGGTGTGGAGAGAATA
TCTTATGTCTGTAGGGATGTGGCATTTCCTGTCAATAATAAATCGGATGG
CCTATGTATGACTTAGGCAGAGAATAGATGGTGGGACATCCAGGAGAAGA
GAGAATTATGGGATAGAGCTAGGTGGGAATATTTACCCGGGAAGATGTGA
GGAGAAAACCTGCAAAGCACCTGAACACAGATACCCAGCCAAGTGTCAGG
ATGTACCCTAAAATAGATGGGATATTTTAAGTTAGATAAAGTCAGAGAAG
AGCCAAGCTATATGGCCAAGGTATTTGTAAATATATTTTGAGTCTGAGTC
TTATTTCTGGGAGCATGGGGCTTGGAGGAAGAACCTGACCTAACTTCCAC
ACCTGGGTGATTTCAGAAGTCCATAGACAAAGGCACATTAGAGAAGTACA
GCATACAAACACACAGATGTGCTCACAGGGCTCCTCAGAGCAGCCTGCCA
TGATCATCACATCTACTGGCTTATCACACCCTCAGTGCCCCAGGCATCTC
TGTGCTTCATAGAGTCTATTTGTGTGGACAGGATGCATTTTCCAAGTGAG
ATGGATGCAGAGATACGTCAAACAGCTGCTGTGTTTAATAGACTGGCTTA
TCTTACTGTGCATAGATTTCATCATAAGGACAATTGGAAGTCATTTGCTA
CAGACCATTGTAAAGACCAAAGGA

NNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGTGGTTGTAATAACCA
TGGAAGGAGATACAGAGAAAAAGTTTGGAGCTGAGACGAAAGGAAGGACC
ATCCAGAAACTGCCCCACCTAGGGATCCATCCCATAATCTGCCACCAAAT
GCAGACACCATTGCATATGCCAGCAAGATTTTGCTGAAAGGACCCTGATA
TAGCTGTCTCTTTTGAGGCTATGCCAGTGCCTGGATAACACAGAAGTGAG
TGCTCACAGTCATCTATTGGATGGAACACACAGCCGCCAATGTGGATAGA
GAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGTTACAAC
AATATGAACTAACCAGTAACCCCAGAGCTCGTGTCTCTAGCTGCATATGT
AGCAGAAGATGGCCTAGTCAGCCATCATTGGGAAGAGAGGCCTCTTGGTC
TTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAGAAGTG
GAAGTGTGTGGGGAGGGGAGTAGGACAAGGAGAAGGGTATAGGGGACCTT
CAGGATATCATTTGAAATGTAAATGAAGTAAATATCTAATAAAAAATAAT
TACAAAAAATATGTGAATTAGTCCAGAACTGATAACAATAATGGGGAAAT
ATAATTACACAGTGTTTTAAACACTTTAGGAAATAGAGCAGAATAGAATG
TGGAGTAATAAAACTTAAGATTTGGATGCGCAA

Query= MSMg01no516_e22.b1 MSMg01no516_e22.b1 CHROMAT_FILE:
MSMg01no516_e22.b1 PHD_FILE: MSMg01no516_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:58 2005
         (610 letters)



>mm_chr1_51100131_51101140
          Length = 1010

 Score =  772 bits (399), Expect = 0.0
 Identities = 408/411 (99%), Gaps = 1/411 (0%)
 Strand = Plus / Minus

                                                                        
Query: 200  ggagaaaacctgcaaagcacctgaacacagatacccagccaagtgtcaggatgtacccta 259
            |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1010 ggagaaaacctg-aaagcacctgaacacagatacccagccaagtggcaggatgtacccta 952

                                                                        
Query: 260  aaatagatgggatattttaagttagataaagtcagagaagagccaagctatatggccaag 319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951  aaatagatgggatattttaagttagataaagtcagagaagagccaagctatatggccaag 892

                                                                        
Query: 320  gtatttgtaaatatattttgagtctgagtcttatttctgggagcatggggcttggaggaa 379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891  gtatttgtaaatatattttgagtctgagtcttatttctgggagcatggggcttggaggaa 832

                                                                        
Query: 380  gaacctgacctaacttccacacctgggtgatttcagaagtccatagacaaaggcacatta 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831  gaacctgacctaacttccacacctgggtgatttcagaagtccatagacaaaggcacatta 772

                                                                        
Query: 440  gagaagtacagcatacaaacacacagatgtgctcacagggctcctcagagcagcctgcca 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771  gagaagtacagcatacaaacacacagatgtgctcacagggctcctcagagcagcctgcca 712

                                                                        
Query: 500  tgatcatcacatctactggcttatcacaccctcagtgccccaggcatctctgtgcttcat 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711  tgatcatcacatctactggcttatcacaccctcagtgccccaggcatctctgtgcttcat 652

                                                               
Query: 560  agagtctatttgtgtggacaggatgcattttccaagtgagatggatgcaga 610
            |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 651  agagtctatttgtgtggacaggatgcattttccaagtgagatggattcaga 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)