BAC Information

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BAC

Clone NameMSMg01-516O10
Chromosome1 (Build37)
Map Location 174,314,669 - 174,315,223
singlet/doubletsinglet
Overlap genenone
Upstream genePvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
Downstream geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516O10.T7 (MSMg01no516_o10.b1)MSMg01-516O10.TJ (MSMg01no516_o10.g1)
ACCAG588785AG588786
length749798
length of high quality
(start - end)		694 (51 - 744)46 (79 - 124)
definitionCHROMAT_FILE: MSMg01no516_o10.b1 PHD_FILE: MSMg01no516_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:48 2005CHROMAT_FILE: MSMg01no516_o10.g1 PHD_FILE: MSMg01no516_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAATTCATGAATCTCACACACTCTCTCCTTCCTCTATCCTT
TCTCTCCTATCTAGTGATGGGAGTGAAACCAGGGGCATAAAGAGTAGGAA
AAAGAACCCACAAAGTAGCAAAGACCAGCTACAAGAGGATTTGCATGTGA
AAAAAATTATTAAATATCTAGAAGTCACTAAGAGAAATGTTTAAGAACAA
TAGAAATAGGCTTGAAATTAAGAGCCCTTGCTGGTCTTCCAGAAGGCCTG
GGTTCAGTTCCCAGTACCTTACACTTGTAATCCCATAGCCAGAGGAGCCA
AATCTCTTCTTTCGGCCTCTGAGAGCATCAAGCACACACAGGAACTTGGT
AGAAGTGAAGAACTGTCCTTTACAAGAACTGTCCCTTACACATCAAGAAG
GTCAAATTGATTGGCAGGACATCTGCCAGACTTAAGTGTTGAGTCCCATT
TATTTTGCAGAAATCATCTGCTGGAGCTGGGCACTCTGGGAAAAAAAACA
AACGTCTAAAACAGTGAAAAGGGCATGTTAGTTTAGTCAGAAATTTTCAC
TTAAATTCTAGTTCTGGCTGGCTTTATCAGCCAGCCATTTAATCTTTAAA
CCACTAAGCTTGTCTATAAAAGTAAGTCCAAACACCAAATCTGAAGTGTT
GTCATAAAAATTAACTTGTGTCAGAGTAAAGAAATTGATTAACATTGAA

NNTTCGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTATGTGGGGGGGGGGCCCCACCAACCGACCACCCACAAATCC
TACAACGCTGAAGGCTCCACTCAGCTGGTACCATACCAACCTCATTTTCA
GGGGGCCCCACCCCCCAGTCATCAGAACAATGACCCTGCCATGCTAAGTG
TCAGAAGTGCTAAAGCCCAGAAAGAATGATTATGTGTGAAGGAGGACTTC
CTTGAGGCAACAAAAAACGACCCTTATCTACCATTTACCTACAGCCATCT
GAGAAATAAGCCCTTTCATATATATTCCACAATACTTATTACGGCACAGA
TTCTTTTCTAAATTATTTCCCCCCTTCACCCACCACCCTTTTATGAATCC
CTGGCCGGATATATCCCACCATTATGTGCCTTAGACTGAGTATTACAATT
CTTCACCCCCCCCTTACATTTAACTACTCCCATACCTCCCCCATATATTA
ATTTCTCCCACTAGTTCCCTGAACAACTCCATATTTTTCTCCACCCACCA
CCTTATCTTTTTCTTTCCCATCACTACATATAACTCATTCAACTTATAAA
CCTTCACCTCTAATTTTTTTTATACATTTTTACCCCTCTTTCACACACCT
TATCAACTCTATATACTAAACATACCTAGCTCTCCCATTTAATCTATCCC
TCCATATATAGATATTTACCTTCCATAATTACGACTTTTTTATACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_o10.b1 MSMg01no516_o10.b1 CHROMAT_FILE:
MSMg01no516_o10.b1 PHD_FILE: MSMg01no516_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:48 2005
         (694 letters)



>mm_chr1_174314130_174315223
          Length = 1094

 Score = 1073 bits (555), Expect = 0.0
 Identities = 555/555 (100%)
 Strand = Plus / Minus

                                                                        
Query: 140  tttgcatgtgaaaaaaattattaaatatctagaagtcactaagagaaatgtttaagaaca 199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 tttgcatgtgaaaaaaattattaaatatctagaagtcactaagagaaatgtttaagaaca 1035

                                                                        
Query: 200  atagaaataggcttgaaattaagagcccttgctggtcttccagaaggcctgggttcagtt 259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 atagaaataggcttgaaattaagagcccttgctggtcttccagaaggcctgggttcagtt 975

                                                                        
Query: 260  cccagtaccttacacttgtaatcccatagccagaggagccaaatctcttctttcggcctc 319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  cccagtaccttacacttgtaatcccatagccagaggagccaaatctcttctttcggcctc 915

                                                                        
Query: 320  tgagagcatcaagcacacacaggaacttggtagaagtgaagaactgtcctttacaagaac 379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  tgagagcatcaagcacacacaggaacttggtagaagtgaagaactgtcctttacaagaac 855

                                                                        
Query: 380  tgtcccttacacatcaagaaggtcaaattgattggcaggacatctgccagacttaagtgt 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854  tgtcccttacacatcaagaaggtcaaattgattggcaggacatctgccagacttaagtgt 795

                                                                        
Query: 440  tgagtcccatttattttgcagaaatcatctgctggagctgggcactctgggaaaaaaaac 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794  tgagtcccatttattttgcagaaatcatctgctggagctgggcactctgggaaaaaaaac 735

                                                                        
Query: 500  aaacgtctaaaacagtgaaaagggcatgttagtttagtcagaaattttcacttaaattct 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734  aaacgtctaaaacagtgaaaagggcatgttagtttagtcagaaattttcacttaaattct 675

                                                                        
Query: 560  agttctggctggctttatcagccagccatttaatctttaaaccactaagcttgtctataa 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674  agttctggctggctttatcagccagccatttaatctttaaaccactaagcttgtctataa 615

                                                                        
Query: 620  aagtaagtccaaacaccaaatctgaagtgttgtcataaaaattaacttgtgtcagagtaa 679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614  aagtaagtccaaacaccaaatctgaagtgttgtcataaaaattaacttgtgtcagagtaa 555

                           
Query: 680  agaaattgattaaca 694
            |||||||||||||||
Sbjct: 554  agaaattgattaaca 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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