BAC Information

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BAC

Clone NameMSMg01-517A22
Chromosome1 (Build37)
Map Location 56,047,830 - 56,241,038
singlet/doubletdoublet
Overlap genenone
Upstream geneSf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517A22.T7 (MSMg01no517_a22.b1)MSMg01-517A22.TJ (MSMg01no517_a22.g1)
ACCAG588904AG588905
length774773
length of high quality
(start - end)		682 (33 - 714)641 (63 - 703)
definitionCHROMAT_FILE: MSMg01no517_a22.b1 PHD_FILE: MSMg01no517_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:01 2005CHROMAT_FILE: MSMg01no517_a22.g1 PHD_FILE: MSMg01no517_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,047,830 - 56,048,507)(56,240,401 - 56,241,038)
sequence
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTAAAAT
ATTTTATAGTTCAGTTAGTGTTGTTTCAGAAAGGAACTCCAAAGAAAATT
CAAACAAGAGCATTCCTAGGTGTTCATGAAAATGTGGGACCAATTTTAAA
ATAACTTATTTTACTAAAATGTAAAGTATAAATTCTCATTTGGAATTGGT
TTCCACCAGCTGTCTTGGAAGTATTTATGATTATAGCATACAGCAAGCTA
GAAATGAATAAAGCAGTATGATTCACTACAAGATATCTTGAAGATTATGG
ATTTCCATTTGAGATTGTATTGGAGACACATTTTACTTTGGGCCATTGTG
AACACGTGCAGACCCACAGTTAAAACTTTGAAAAATGTTGGAAGACATGC
AAAACAGAGAAAAGATGGTACGGTGATGCCTCCTTCCAGCACCAGAAGGA
CCATGTACTTTCTGTATCTGATACAGGCACATTGCACCATAGAGTCGCAC
CATCAGCTATCTCACGCCGGCTTCATGTCCCTTATCAGCTATTATTCAAA
TATGTTCAGATAACTGTTGTCTGTTGACATAACTTTGAAGATCAAGCAAC
ACAAGAGACAAAGGATGCCCAAGCCACCCAAGAAACATGGCTGTGGAGAC
TGATACTGCATAAAACTGACAGAAGATCTATCTGTTAGCAAAGGAGGGCA
CAATAAATGCTGAAGAGAGCGGGAGGGAAGTGTGAGAAGTTCATTATTTG
CCTCTAAGTCACTGTCAAGAGTAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCTTGGAAAGAACTATTAGTATATTAAAAATAAGCAT
TAGAGTTTGGGGAGGAAAAAGGAATAGGGTGTGACATTTTTCATGTGGCT
AGAGTGAAGTAAGAGATTTGAAGGCGAAACAAATCTGGCAAATTATAAGT
TATGGTAGTAATTCAAGGAAGTCATAAAATAGAAGACTTTTATTGCACCA
GAGAGACAGTTTGGTGCTATTAGTGGATTAAAAAGCATGTGGGTCTGAGA
GTCTCAGAAAGATGGAAGCTTGAAAGCGCTGGTGGGTTAAATATTAACAG
AGAAAAGATGTTTACTGACAGATTCTGCAAACACACTCTAATAAATAGGA
TCCTCCAAAGCATTCAAAAATAGAACTGTGCAAAGCCACAGGAATCCATG
CTATCGAACTTCCCACCAAATTTTGCTCTCCTGCAGTAATGCATCACTCC
CCTGCTAGTCCTTCAGCACAGCCGCGCCAGAACACTCGAAAGCTAGTAAA
AATAGAGGGGGTGGGAGATTGGTGACAATTTTGCACTTGTCTTTAAAAGC
TGGCTCCCTGCGCTGAAGGCAGCGAACTGTGGTGCAAACGTGTGAATGTG
AGCTTCCAACAGACCTGAGCTCAAAGCAAGCTGCACACTTGAGCCTCTGG
GAGCCTCAGAGTCCTTATCTGAATTAATGGCACCACCATGCATATTTCTC
AGGGCTGCTTTTCAGTGCTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_a22.b1 MSMg01no517_a22.b1 CHROMAT_FILE:
MSMg01no517_a22.b1 PHD_FILE: MSMg01no517_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:01 2005
         (682 letters)



>mm_chr1_56047627_56048708
          Length = 1082

 Score = 1295 bits (670), Expect = 0.0
 Identities = 676/678 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattaaaatattttatagttcagttagtgttgtttcagaaaggaactccaaaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattaaaatattttatagttcagttagtgttgtttcagaaaggaactccaaaga 263

                                                                       
Query: 64  aaattcaaacaagagcattcctaggtgttcatgaaaatgtgggaccaattttaaaataac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaattcaaacaagagcattcctaggtgttcatgaaaatgtgggaccaattttaaaataac 323

                                                                       
Query: 124 ttattttactaaaatgtaaagtataaattctcatttggaattggtttccaccagctgtct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttattttactaaaatgtaaagtataaattctcatttggaattggtttccaccagctgtct 383

                                                                       
Query: 184 tggaagtatttatgattatagcatacagcaagctagaaatgaataaagcagtatgattca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggaagtatttatgattatagcatacagcaagctagaaatgaataaagcagtatgattca 443

                                                                       
Query: 244 ctacaagatatcttgaagattatggatttccatttgagattgtattggagacacatttta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctacaagatatcttgaagattatggatttccatttgagattgtattggagacacatttta 503

                                                                       
Query: 304 ctttgggccattgtgaacacgtgcagacccacagttaaaactttgaaaaatgttggaaga 363
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttgggctattgtgaacacgtgcagacccacagttaaaactttgaaaaatgttggaaga 563

                                                                       
Query: 364 catgcaaaacagagaaaagatggtacggtgatgcctccttccagcaccagaaggaccatg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 catgcaaaacagagaaaagatggtacggtgatgcctccttccagcaccagaaggaccatg 623

                                                                       
Query: 424 tactttctgtatctgatacaggcacattgcaccatagagtcgcaccatcagctatctcac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tactttctgtatctgatacaggcacattgcaccatagagtcgcaccatcagctatctcac 683

                                                                       
Query: 484 gccggcttcatgtcccttatcagctattattcaaatatgttcagataactgttgtctgtt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gccggcttcatgtcccttatcagctattattcaaatatgttcagataactgttgtctgtt 743

                                                                       
Query: 544 gacataactttgaagatcaagcaacacaagagacaaaggatgcccaagccacccaagaaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gacataactttgaagatcaagcaacacaagagacaaaggatgcccaagccacccaagaaa 803

                                                                       
Query: 604 catggctgtggagactgatactgcataaaactgacagaagatctatctgttagcaaagga 663
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 804 catggctgtggagactgatactgcataaaactgacagaagatctttctgttagcaaagga 863

                             
Query: 664 gggcacaataaatgctga 681
           ||||||||||||||||||
Sbjct: 864 gggcacaataaatgctga 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no517_a22.g1 MSMg01no517_a22.g1 CHROMAT_FILE:
MSMg01no517_a22.g1 PHD_FILE: MSMg01no517_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:01 2005
         (641 letters)



>mm_chr1_56240198_56241238
          Length = 1041

 Score = 1226 bits (634), Expect = 0.0
 Identities = 637/638 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ttggaaagaactattagtatattaaaaataagcattagagtttggggaggaaaaaggaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttggaaagaactattagtatattaaaaataagcattagagtttggggaggaaaaaggaat 782

                                                                       
Query: 64  agggtgtgacatttttcatgtggctagagtgaagtaagagatttgaaggcgaaacaaatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agggtgtgacatttttcatgtggctagagtgaagtaagagatttgaaggcgaaacaaatc 722

                                                                       
Query: 124 tggcaaattataagttatggtagtaattcaaggaagtcataaaatagaagacttttattg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tggcaaattataagttatggtagtaattcaaggaagtcataaaatagaagacttttattg 662

                                                                       
Query: 184 caccagagagacagtttggtgctattagtggattaaaaagcatgtgggtctgagagtctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caccagagagacagtttggtgctattagtggattaaaaagcatgtgggtctgagagtctc 602

                                                                       
Query: 244 agaaagatggaagcttgaaagcgctggtgggttaaatattaacagagaaaagatgtttac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agaaagatggaagcttgaaagcgctggtgggttaaatattaacagagaaaagatgtttac 542

                                                                       
Query: 304 tgacagattctgcaaacacactctaataaataggatcctccaaagcattcaaaaatagaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgacagattctgcaaacacactctaataaataggatcctccaaagcattcaaaaatagaa 482

                                                                       
Query: 364 ctgtgcaaagccacaggaatccatgctatcgaacttcccaccaaattttgctctcctgca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctgtgcaaagccacaggaatccatgctatcgaacttcccaccaaattttgctctcctgca 422

                                                                       
Query: 424 gtaatgcatcactcccctgctagtccttcagcacagccgcgccagaacactcgaaagcta 483
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 421 gtaatgcatcactcccctgctagtccttcagcacagccgtgccagaacactcgaaagcta 362

                                                                       
Query: 484 gtaaaaatagagggggtgggagattggtgacaattttgcacttgtctttaaaagctggct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtaaaaatagagggggtgggagattggtgacaattttgcacttgtctttaaaagctggct 302

                                                                       
Query: 544 ccctgcgctgaaggcagcgaactgtggtgcaaacgtgtgaatgtgagcttccaacagacc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccctgcgctgaaggcagcgaactgtggtgcaaacgtgtgaatgtgagcttccaacagacc 242

                                                 
Query: 604 tgagctcaaagcaagctgcacacttgagcctctgggag 641
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgagctcaaagcaagctgcacacttgagcctctgggag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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