Query= MSMg01no517_g07.b1 MSMg01no517_g07.b1 CHROMAT_FILE:
MSMg01no517_g07.b1 PHD_FILE: MSMg01no517_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:28 2005
(653 letters)
>mm_chr1_150966019_150967073
Length = 1055
Score = 1187 bits (614), Expect = 0.0
Identities = 642/652 (98%), Gaps = 5/652 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggagtttgaaggagtggagagaagggga-catgtggttaggatatattgtagg 63
|||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||
Sbjct: 206 gaattcaggagtttgaaggagtggagagca-gggagcgtgtggttaggatatattgtagg 264
Query: 64 agagaagaatatgctttcaataagataagaataaaagcaaaaaataaaactaaaagtggt 123
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 agagaagaatatgctttcaataagataagaataaaag-gaaaaataaaactaaaagtggt 323
Query: 124 gaaatattgtggccccattggcaaatcatagaggaaaatagaatccgacaagtcttaaaa 183
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaaatattgtggctccattggcaaatcatagaggaaaatagaatccgacaagtcttaaaa 383
Query: 184 ctcaggttttgaaaataaaacttctatgcattactatac--atatatattacatataggt 241
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 ctcaggttttgaaaataaaacttctatgcattactatacatatatatattacatataggt 443
Query: 242 agatgtgcttgtgaatttgcatgataaattagtaggaataaattatctttaacaaataaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agatgtgcttgtgaatttgcatgataaattagtaggaataaattatctttaacaaataaa 503
Query: 302 gaatgtttataacagtatagtgcagtgggtcaatacattttaccaaggccatggtcattc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaatgtttataacagtatagtgcagtgggtcaatacattttaccaaggccatggtcattc 563
Query: 362 tgaatgaacttggtggttacttttgtttcatctgagaattaaggtataactagtgaaaaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaatgaacttggtggttacttttgtttcatctgagaattaaggtataactagtgaaaaa 623
Query: 422 aatagaatgatctttgtaatatgttaaatctgtggatcaaaagacaacataaacaaaata 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatagaatgatctttgtaatatgttaaatctgtggatcaaaagacaacataaacaaaata 683
Query: 482 aaaggcaatttaatacacagaatatatttgcatagtactacataagggattttcaggtat 541
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 684 aaaggcaatttaatacacagaatatatttgcatagtactacataaggtattttcaggtat 743
Query: 542 aagcatacagaatctctgaaactacatacatagcctcaaacctaaccccacaacctaaaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aagcatacagaatctctgaaactacatacatagcctcaaacctaaccccacaacctaaaa 803
Query: 602 tgagcaaaggacttcagtagactggcttcaaagtagacataacaattgtcaa 653
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgagcaaaggacttcagtagactggcttcaaagtagacataacaattgtcaa 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1055
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1045
Effective search space: 671935
Effective search space used: 671935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_g07.g1 MSMg01no517_g07.g1 CHROMAT_FILE:
MSMg01no517_g07.g1 PHD_FILE: MSMg01no517_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:28 2005
(600 letters)
>mm_chr1_151121129_151122128
Length = 1000
Score = 1145 bits (592), Expect = 0.0
Identities = 598/600 (99%)
Strand = Plus / Minus
Query: 1 agtcttgtacaaagttggttactacaggatggtctttgaaagattatttcatgggacatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agtcttgtacaaagttggttactacaggatggtctttgaaagattatttcatgggacatc 741
Query: 61 acaatttcttgtaatagaacttattctgtaagtccaacttgacaatgatgtgtcattctt 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 740 acaatttcttgtaatagaacttgttctgtaagtccaacttgacaatgatgtgtcattctt 681
Query: 121 tgtgtagttttcagtgtatctgacaccaaacagacacttcacattcttttcagagtgaca 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtctagttttcagtgtatctgacaccaaacagacacttcacattcttttcagagtgaca 621
Query: 181 aagtctaattgcagaagaggattattttcatgttattaagaattttgttcaatacaatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagtctaattgcagaagaggattattttcatgttattaagaattttgttcaatacaatgt 561
Query: 241 tatgtggaattcagttcttcacagtaaaatatgttctgtgaatgagcataactggaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatgtggaattcagttcttcacagtaaaatatgttctgtgaatgagcataactggaaata 501
Query: 301 gaaaaacaataactttttatatagaactgaacatgctaaagatgaaatagcttagaaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaaaaacaataactttttatatagaactgaacatgctaaagatgaaatagcttagaaact 441
Query: 361 cttcaaatagaatagagcatatacacacctttaacacgctacaaggttatctccggttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttcaaatagaatagagcatatacacacctttaacacgctacaaggttatctccggttct 381
Query: 421 gtgagaaaatgtttctagtcagtctaaattagttcatccaatcaggcaactgatgaggca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgagaaaatgtttctagtcagtctaaattagttcatccaatcaggcaactgatgaggca 321
Query: 481 atttttaccacacttgaatttcctgcacagctataaagaagaaataaaacataattagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atttttaccacacttgaatttcctgcacagctataaagaagaaataaaacataattagaa 261
Query: 541 agcctaagagaaaatttgcagccatttctactttccttttatgccccctctctttgctta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agcctaagagaaaatttgcagccatttctactttccttttatgccccctctctttgctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
