Query= MSMg01no517_h12.b1 MSMg01no517_h12.b1 CHROMAT_FILE:
MSMg01no517_h12.b1 PHD_FILE: MSMg01no517_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:34 2005
(683 letters)
>mm_chr1_181057121_181058201
Length = 1081
Score = 1168 bits (604), Expect = 0.0
Identities = 660/684 (96%), Gaps = 12/684 (1%)
Strand = Plus / Minus
Query: 5 gaattcagtgtttacagcactggccaggctggccctcagggaaaaatggtcagtctgatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 gaattcagtgtttacagcactggccaggctggccctcagggaaaaatggtcagtctgatg 822
Query: 65 taattaatcactcattttcttttcctgtcttgattctcattgacaaaaattcatttgcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 taattaatcactcattttcttttcctgtcttgattctcattgacaaaaattcatttgcag 762
Query: 125 tgtgcattggatacaggcacaggggactgagcgtgtccccccccccccc--gggtggggg 182
||||||||||||||||||||||||||||||||| ||||||||| ||| |||||
Sbjct: 761 tgtgcattggatacaggcacaggggactgagcg-------ccccccccctgggggggggg 709
Query: 183 ggaga--gtggtgaaagggctcagaaaagttgtcatgttctgaaaacggaagtaaaggaa 240
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 708 ggagatggtggtgaaagggctcagaaaagttgtcatgttctgaaaacagaagtaaaggaa 649
Query: 241 gacaggccatcttgtctctgagggaccttctgtgtcaagcccttctcttctggaggcttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gacaggccatcttgtctctgagggaccttctgtgtcaagcccttctcttctggaggcttg 589
Query: 301 ggggcaaaggtcatgtgtacagcaggtcacctgtcttcttggaggaccatggctatttaa 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 588 ggggcaaaggtcatgtgtacagcaggtcacctgtcttcttggaggatcatggctatttaa 529
Query: 361 atattcatgtagggaatgatccaagggttgaaccccaaaagaagtacaggcagctgcctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 atattcatgtagggaatgatccaagggttgaaccccaaaagaagtacaggcagctgcctc 469
Query: 421 tgagcagaccaacactccaccgagcgcagaggtagtgctcaacctatggaatgtgcacac 480
||||||||||||||||||||||||| | ||||||||||||| |||||||||||| ||||
Sbjct: 468 tgagcagaccaacactccaccgagcaccgaggtagtgctcatcctatggaatgtttacac 409
Query: 481 tgtccttactgagaagagtttgcgagccgtgtgcattttcccctaggacctggaacgtgc 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 408 tgtccttactgagaagagtttgcgagccgtgtgcatttccccctaggacctggaacgtgc 349
Query: 541 tatggacatgaattgaatatgaattaggtaggcttgcgaaaggattaattttagaaagca 600
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 348 tatggacatgaattgaatatgaattaggtaggcttgcaaaaggattaattttagaaagca 289
Query: 601 caaagccaaaattccttgctaatattctgatattcatttctttgatacagcacttaactt 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 288 caaagccaaaattccttgctaatattctgatattcgtttctttgatacagcacttaactt 229
Query: 661 ac-aaccatacttgatcatcacaa 683
|| ||||| |||||||||||||||
Sbjct: 228 acaaaccacacttgatcatcacaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1081
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1071
Effective search space: 720783
Effective search space used: 720783
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_h12.g1 MSMg01no517_h12.g1 CHROMAT_FILE:
MSMg01no517_h12.g1 PHD_FILE: MSMg01no517_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:34 2005
(643 letters)
>mm_chr1_180906085_180907127
Length = 1043
Score = 1174 bits (607), Expect = 0.0
Identities = 634/643 (98%)
Strand = Plus / Plus
Query: 1 aaaaggcacaaagagaagccttcaccggcaggacctttgctctgtgcccagtgctctccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaggcacaaagagaagccttcaccggcaggacctttgctctgtgcccagtgctctccg 260
Query: 61 tgtgctacagccacagtggcactgcctcagaggtagcaaagctttgacattttatagggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgctacagccacagtggcactgcctcagaggtagcaaagctttgacattttatagggc 320
Query: 121 aggaagagacagttagtgctcgggcttgtttgcaaagcctaaagtcaaagcatttgctgg 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 aggaagagacagttagtgctcgggcttgtttgcgaagcctaaagtcaaagcatttgctgg 380
Query: 181 tcctaaagtgagagcttcacctacctgttggagttgcatctcccaacgaatacatagacc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tcctaaagtgagagcttcacctacctgttggagttgcatctcccaacgaatacacagacc 440
Query: 241 tagttgtatggatgttagctgagaaatctggaatagtgatggggcttgggaaaaagaggt 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tagttgtatggatgttagctgagaaatctagaatagtgatggggcttgggaaaaagaggt 500
Query: 301 ttgcaactcctgaaaatctagtctgggggaaaatgtattgccaggcgaagctggcagagg 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 ttgcaactcctgaaaatctagtctgggggaaaatgtattgccaggtgaagctggcagagg 560
Query: 361 acaggatggtggggaatcttccagtagtaggttaggctgtcccaagatgaatgcaccgcc 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaggatggtggagaatcttccagtagtaggttaggctgtcccaagatgaatgcaccgcc 620
Query: 421 cagttactgacatgggaaaccagacattgagtactgtctgaagggatatggctgaaattg 480
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 cagtcactgacatgggaaaccagacactgagtactgtctgaagggatatggctgaaattg 680
Query: 481 ttttgcatttacctatacagcatccttgccaaaccaaacagaaaccaacagaccagaaca 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 ttttgcatttacctatacagcatccttgccaaaccaaacagaaaccaacaaaccagaaca 740
Query: 541 gaatctaatggagctcataaaattagatcccattttatgggaaacacgagtgataaagga 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 gaatctaatggagctcataaaattagatcccattttatgggaaacacaagtgataaagga 800
Query: 601 atttgtggaagcatcgggctaagtccagggtgtgggaatccac 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttgtggaagcatcgggctaagtccagggtgtgggaatccac 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
