Query= MSMg01no517_k14.b1 MSMg01no517_k14.b1 CHROMAT_FILE:
MSMg01no517_k14.b1 PHD_FILE: MSMg01no517_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:49 2005
(645 letters)
>mm_chr1_82414836_82415880
Length = 1045
Score = 1027 bits (531), Expect = 0.0
Identities = 592/643 (92%), Gaps = 49/643 (7%)
Strand = Plus / Minus
Query: 1 aggcaaaaaagtacctcttcgattctgccaaggagcttagttaaatattcaaatattact 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aggc-aaaaagtacctcttcgattctgccaaggagcttagttaaatattcaaatattact 590
Query: 61 aagagtcacatttattccatgaatgtaaggcaaatcagagtaaactatagcaagacgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aagagtcacatttattccatgaatgtaaggcaaatcagagtaaactatagcaagacgc-- 532
Query: 121 agagagagagagagagagagagagagagagagagagagagagagagagaggattatgact 180
||||||||||||||||||||||||
Sbjct: 531 ------------------------------------agagagagagagaggattatgact 508
Query: 181 tgaagttaggtattatgctgtataagcaagagctccccagggtcctgcagtctgtcccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgaagttaggtattatgctgtataagcaagagctccccagggtcctgcagtctgtcccct 448
Query: 241 ctgtctcctctggtgtagaaaagacagtggttagagagagaacagtgagaagaaacacag 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctgtctcctctgttgtagaaaagacagtggttagagagagaacagtgagaagaaacacag 388
Query: 301 aaacacaactgttgttcacagggcctctttgtatagaacagactagtctgaaacttttga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaacacaactgttgttcacagggcctctttgtatagaacagactagtctgaaacttttga 328
Query: 361 tcctcctgcctcagcatcctgagtgctgggattacagccatgtaccagggtactccccac 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 327 tcctcctgcctcagcatcctgagtgctgggattacagccacgtaccagggtactccccac 268
Query: 421 tgtacttggaatagtttgcagaatgtccttttagcttccccacgactgtaaaataaaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgtacttggaatagtttgcagaatgtccttttagcttccccacgactgtaaaataaaata 208
Query: 481 aaataaaataaaataaaatgaagtgaaataaaatagaagctggatcttttgataaatatc 540
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aaataaaat----------gaagtgaaataaaatagaagctggatcttttgataaatatc 158
Query: 541 agtgctagacttcatgatccagctatttgcgtgtttgctaattcttttatcccttccctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 agtgctagacttcatgatccagctatttgcgtgtttgctaattcttttatcccttccctc 98
Query: 601 aggctttggtcattcgacaagtatttgctaagcacgtgcctgg 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 aggctttggtcattcgacaagtatttgctaagcacgtgcctgg 55
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_k14.g1 MSMg01no517_k14.g1 CHROMAT_FILE:
MSMg01no517_k14.g1 PHD_FILE: MSMg01no517_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:49 2005
(532 letters)
>mm_chr1_82277769_82278700
Length = 932
Score = 990 bits (512), Expect = 0.0
Identities = 527/532 (99%)
Strand = Plus / Plus
Query: 1 tgatgctacaaataataaaaactatccataaaaataactacctacaagaaggaggagatt 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatgctacaaataagaaaaactatccataaaaataactacctacaagaaggaggagatt 260
Query: 61 ctgaacagaataaatgttgagcaatatcacaggtctccattggttacagcctgacctaca 120
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ctgaacagaagaaatgttgagcaatatcacgggtctccattggttacagcctgacctaca 320
Query: 121 ctgctacaggagtgtggtgctcctgataggtgaggtgggaaagcagaaaactccagatga 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ctgctacaggagtgtggtgctcctgataggtgaagtgggaaagcagaaaactccagatga 380
Query: 181 cttgcatacccatgggagagtttatttttaaatgagacatgaggagaccaatccagtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgcatacccatgggagagtttatttttaaatgagacatgaggagaccaatccagtctg 440
Query: 241 aagatgacttcaaacatgtcaataaatacaatcagagggctttgccttaaagtccattaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagatgacttcaaacatgtcaataaatacaatcagagggctttgccttaaagtccattaa 500
Query: 301 aacatgaaaatgccctttcccaataagaaaggtcaaaaaaccaatcctaagtcaaaaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacatgaaaatgccctttcccaataagaaaggtcaaaaaaccaatcctaagtcaaaaagc 560
Query: 361 cttccttccaggcctccatgtgcctagacagaggacatggaggtaaaagaagtggtgagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttccttccaggcctccatgtgcctagacagaggacatggaggtaaaagaagtggtgagg 620
Query: 421 acacccccatgcactgaaccatggccccaactactgcttctggagaaacaagctcaggac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacccccatgcactgaaccatggccccaactactgcttctggagaaacaagctcaggac 680
Query: 481 agatgactcattaagagtatcaatcatttgctccaaaacacccctatgttta 532
|||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 agatgactcattaagagtatcagtcatttgctccaaaacacccctatgttta 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
