Query= MSMg01no517_o14.b1 MSMg01no517_o14.b1 CHROMAT_FILE:
MSMg01no517_o14.b1 PHD_FILE: MSMg01no517_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:09 2005
(637 letters)
>mm_chr1_160753851_160754889
Length = 1039
Score = 934 bits (483), Expect = 0.0
Identities = 536/573 (93%), Gaps = 32/573 (5%)
Strand = Plus / Minus
Query: 5 gaattcactcattgccccactgtggttgaaaggatattttctattttcttatgttaggat 64
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaattcactcattgccccgctatggttgaaaggatattttctattttcttatgttaggat 512
Query: 65 tctagatctgacttttagacttatctttcacagacttgga--tttttctgcatatagatt 122
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 511 tctagatctgacttttagacttatctttcacagacttggatttttttttgcatatagatt 452
Query: 123 cataatacttttaaagaaatacagcatgccaatttctctaatagcagccactgaagtgtt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cataatacttttaaagaaatacagcatgccaatttctctaatagcagccactgaagtgtt 392
Query: 183 cattcttgccttgttttctagtgcgacacccattacgtaccagctcctagggaatgcatg 242
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cattcttgccttgtttgctagtgcgacacccattacgtaccagctcctagggaatgcatg 332
Query: 243 agtctgtttcaaagtctctattgcacttacttgacccatctttctgttcattacaaaaat 302
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 331 agtctgtttcaaagtctctattgcacttacttggcccatctttctgttcattacaaaaat 272
Query: 303 tcacagcttgtattgctatggattttactgtgtaaacaaatttggctgtaaattgaagtt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tcacagcttgtattgctatggattttactgtgtaaacaaatttggctgtaaattgaagtt 212
Query: 363 catta----------------------------ttagaaatgtaaccttgtgattctgtc 394
||||| |||||||||||||||||||||||||||
Sbjct: 211 cattattcatgaacattttgtttcaatgtaattttagaaatgtaaccttgtgattctgtc 152
Query: 395 tttctgaatcatccttttttaaaaaaattttttattaggtatttatttcatttacatttc 454
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tttctgaatcatccttttt--aaaaaattttttattaggtatttatttcatttacatttc 94
Query: 455 caatgctatcccaaaagtcccccacaccctcccccacccattcccccacccacccactcc 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 caatgctatcccaaaagtcccccacaccctcccccacccattcccccacccacccactcc 34
Query: 515 aacttcttggccctggtgttcccctgtactgag 547
|||||||||||||||||||||||||||||||||
Sbjct: 33 aacttcttggccctggtgttcccctgtactgag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1039
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1029
Effective search space: 645183
Effective search space used: 645183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_o14.g1 MSMg01no517_o14.g1 CHROMAT_FILE:
MSMg01no517_o14.g1 PHD_FILE: MSMg01no517_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:09 2005
(656 letters)
>mm_chr1_160591330_160592385
Length = 1056
Score = 1222 bits (632), Expect = 0.0
Identities = 650/656 (99%)
Strand = Plus / Plus
Query: 1 cattctcgtttgcagctgaatagtctccttccctcctcttagaggcttcctgctgctgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattctcgtttgcagctgaatagtctccttccctcctcttagaggcttcctgctgctgtg 260
Query: 61 tgcaaccctagaacctcaccttttccttaggtccactcaaccctattgtggaatttggat 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tgcaaccctagaacctcaccttttccttaggtccgctcaaccctattgtggaatttggat 320
Query: 121 atttacacgaatctggtttgcttgtttattatctagctggaaaatttatgcaggcaggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttacacgaatctggtttgcttgtttattatctagctggaaaatttatgcaggcaggga 380
Query: 181 ccatatgtgtcttcttttgcgtcattgcatccttcatgcttagcacaggaaatggcccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatatgtgtcttcttttgcgtcattgcatccttcatgcttagcacaggaaatggcccct 440
Query: 241 tgtagatggttagcaagcaggtgttgactgaagacaccattaagcagcaggcgcttttag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtagatggttagcaagcaggtgttgactgaagacaccattaagcagcaggcgcttttag 500
Query: 301 taggtctatcttaaagagtatgtcttcctagtttttaaatgctcacttttttatttgaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggtctatcttaaagagtatgtcttcctagtttttaaatgctcacttttttatttgaat 560
Query: 361 ctcaaacagaacagtataaagtgaggaacttgctgatggagtcaatgttaattaagagca 420
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcagtcagaacagtataaagtgaggaacttgctgatggagtcaatgttaattaagagca 620
Query: 421 ggtattgggaagagcctgagtccaatgagccatgcagggcccactccctggcactgcttc 480
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 ggtattgggaagagcctaagtccaatgagccatgcagggcccactccctgacactgcttc 680
Query: 481 attcactagcctgtgaccctgaacatgtacctaactatcactctcagaagtttcactgta 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 attcactagcctgtgaccctgaacatgtacctaactaccactctcagaagtttcactgta 740
Query: 541 agtcattatcaccatccacccaagagttagtatgtaaatgggccttacaaattagaaaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtcattatcaccatccacccaagagttagtatgtaaatgggccttacaaattagaaaca 800
Query: 601 ctatacaaataataactatgatcaggagtcagttcctacttcttagaaactctaag 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctatacaaataataactatgatcaggagtcagttcctacttcttagaaactctaag 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
