Query= MSMg01no517_o23.b1 MSMg01no517_o23.b1 CHROMAT_FILE:
MSMg01no517_o23.b1 PHD_FILE: MSMg01no517_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:11 2005
(551 letters)
>mm_chr1_49414078_49415029
Length = 952
Score = 1029 bits (532), Expect = 0.0
Identities = 544/548 (99%), Gaps = 1/548 (0%)
Strand = Plus / Plus
Query: 5 gaattc-aagtctggtactctcagcacaggccagatcctcaacaatatccatggcttgga 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagtctggtactctcagcacaggccagatcctcaacaatatccatggcttgga 264
Query: 64 ggaacatgataatctgaagtttccatcagagacatgagcctgcactgaatccaatctgtg 123
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 ggagcatgataatctgaagtttccatcagagacatgagccttcactgaatccaatctgtg 324
Query: 124 tattatttagaattaaacagtactttaatgagagggaagaaaaaaggagttggagatctg 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tattatttggaattaaacagtactttaatgagagggaagaaaaaaggagttggagatctg 384
Query: 184 aagagtgctttgacattagacatggagattccgactttcgagtttgtctagctggttttg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagagtgctttgacattagacatggagattccgactttcgagtttgtctagctggttttg 444
Query: 244 attttgctttgatccactatttcctcactatgatattttcaatggtaatgtacttttttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attttgctttgatccactatttcctcactatgatattttcaatggtaatgtacttttttg 504
Query: 304 tgctgttagaggtattttatctcttttgctttttaaggtgattacaattaagagataata 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgctgttagaggtattttatctcttttgctttttaaggtgattacaattaagagataata 564
Query: 364 ctaatttcagaagagatgttgaactttgaaatggtaacattgagattgttatagactgtg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctaatttcagaagagatgttgaactttgaaatggtaacattgagattgttatagactgtg 624
Query: 424 aagacttttgaagtttgactaaaagtatttttcattatgctacggataggtttgccccat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagacttttgaagtttgactaaaagtatttttcattatgctacggataggtttgccccat 684
Query: 484 aaattcacatgtttaaataagcctatgagtaccagggagtggaatgtggtgatttgaata 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaattcacatgtttaaataagcctatgagtaccagggagtggaatgtggtgatttgaata 744
Query: 544 tgcttggc 551
||||||||
Sbjct: 745 tgcttggc 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 952
Length adjustment: 10
Effective length of query: 541
Effective length of database: 942
Effective search space: 509622
Effective search space used: 509622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_o23.g1 MSMg01no517_o23.g1 CHROMAT_FILE:
MSMg01no517_o23.g1 PHD_FILE: MSMg01no517_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:11 2005
(573 letters)
>mm_chr1_49572562_49573534
Length = 973
Score = 576 bits (298), Expect = e-168
Identities = 301/302 (99%)
Strand = Plus / Minus
Query: 272 gcgtagcagttttcctttgtttcgacaggagaagaaaagctatcaattccattcaaattg 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 gcgtagcagttttcctttgtttcgacaggagaagaaaagctatcaattccattcaaattg 914
Query: 332 ataaaactcggttttgactgtgggtgccccctcatagtcttggctgcagactggaaaaag 391
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 913 ataaaactcggttttgactgtgggtgccccctcatagtcttggctgcagacaggaaaaag 854
Query: 392 aaatcaagaagaaggaggaggaggagtacaacaatggtgatgaggacaatgaggagaggg 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaatcaagaagaaggaggaggaggagtacaacaatggtgatgaggacaatgaggagaggg 794
Query: 452 gaggagaggaaggagaagagcttttcctctacatggaaatagctctgaatccttgctgat 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gaggagaggaaggagaagagcttttcctctacatggaaatagctctgaatccttgctgat 734
Query: 512 aatgaaaattcatccaccaagctcttcagctatacatagccaataaatcctggctatgga 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aatgaaaattcatccaccaagctcttcagctatacatagccaataaatcctggctatgga 674
Query: 572 at 573
||
Sbjct: 673 at 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
