Query= MSMg01no518_a09.b1 MSMg01no518_a09.b1 CHROMAT_FILE:
MSMg01no518_a09.b1 PHD_FILE: MSMg01no518_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:18 2005
(646 letters)
>mm_chr1_48492104_48493151
Length = 1048
Score = 1226 bits (634), Expect = 0.0
Identities = 641/644 (99%), Gaps = 2/644 (0%)
Strand = Plus / Minus
Query: 5 gaattcataaatatcgtccttgatgctctcatagttcctcactctacc--ttttttttcc 62
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 848 gaattcataaatatcgtccttgatgctctcatagttcctcactctaccttttttttttcc 789
Query: 63 attagtttccaatagttcacagctgtataggtgagttcacacaagatatacatatcaaca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 attagtttccaatagttcacagctgtataggtgagttcacacaagatatacatatcaaca 729
Query: 123 cctagtgtgtgttacaactgtgctctctgctggaaatataccaagaagcaatgttgagat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cctagtgtgtgttacaactgtgctctctgctggaaatataccaagaagcaatgttgagat 669
Query: 183 ccatctagtgtgtgaaatgatacaggcgtggtgtgttttgttgccacctggctgtttagt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ccatctagtgtgtgaaatgatacaggcgtggtgtgttttgttgccacctggctgtttagt 609
Query: 243 ggctctaggagggtcttctgtgccagcttcacacaggcagcttcactgtgtgcctccatg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ggctctaggagggtcttctgtgccagcttcacacaggcagcttcactgtgtgcctccatg 549
Query: 303 ttccactcatgcaaattctcattccccaacaataagcttctgcatagcaggcctgttcag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttccactcatgcaaattctcattccccaacaataagcttctgcatagcaggcctgttcag 489
Query: 363 ttattgagaatatatgaaattttatttagaactctaacagagggaagcagtcaacttgtg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttattgagaatatatgaaattttatttagaactctaacagagggaagcagtcaacttgtg 429
Query: 423 tcttgaacttaaagtatgaatacattaaaggatattagaatgattttaatagaaagaaat 482
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tcttgaactcaaagtatgaatacattaaaggatattagaatgattttaatagaaagaaat 369
Query: 483 ctatcccctagaaaactatacaaaacacaaagtgaaatagagacttgtttgaagacagta 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctatcccctagaaaactatacaaaacacaaagtgaaatagagacttgtttgaagacagta 309
Query: 543 tctgcccaagagatttccagtggagtaagaaagcattaagaatgggtaatgtggtacctt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tctgcccaagagatttccagtggagtaagaaagcattaagaatgggtaatgtggtacctt 249
Query: 603 atttctaaataaggcttcctgaattctgtatctgccatcttaag 646
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atttctaaataaggcttcctgaattctgtatctgccatcttaag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1048
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1038
Effective search space: 660168
Effective search space used: 660168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_a09.g1 MSMg01no518_a09.g1 CHROMAT_FILE:
MSMg01no518_a09.g1 PHD_FILE: MSMg01no518_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:19 2005
(672 letters)
>mm_chr1_48281475_48282545
Length = 1071
Score = 694 bits (359), Expect = 0.0
Identities = 377/383 (98%), Gaps = 1/383 (0%)
Strand = Plus / Plus
Query: 1 agaaatctccctgcttctacctccctagtgctgaaattaaagacgttaagcatcattaca 60
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 201 agaaatctccctgcttctacctccctagtgctgaaattaaagacattaagcttcattaca 260
Query: 61 ttttaatattgaaatttacaaatttctttagtttttctgcagctgaggagtgaaccattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ttttaatattgaaatttacaaatttctttagtttttctgcagctgaggagtgagccattc 320
Query: 121 gtgtacctttatattactaccaaaatttactttataaatatatatataaatttgattaat 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gtgtaccttta-attactaccaaaatttactttataaatatatatataaatttgattgat 379
Query: 181 ctttactttaaacttttaaatgattttctttgatgtaaaatataattgaaggtgattaat 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 380 ctttactttaaacttttaaatgattttcttttatgtaaaatataattgaaggtgattaat 439
Query: 241 ttaaaatttgttctcatattgggaaacattgatgaatatatttctacctttttaataaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttaaaatttgttctcatattgggaaacattgatgaatatatttctacctttttaataaaa 499
Query: 301 aataacttatcacattaatataattttgttttatatttaaaattaaaagtttaaaaataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aataacttatcacattaatataattttgttttatatttaaaattaaaagtttaaaaataa 559
Query: 361 aataatatacttaaaatattctt 383
|||||||||||||||||||||||
Sbjct: 560 aataatatacttaaaatattctt 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
