NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCAAACACTTTCGCATTTATTTTTTTTAAGCAAATGACAAAAA
CCCAAATTACCAGCTTTTTTAAACCCAAGCTTAACATTACATATTTAAAC
AATAGTCAAACTGACGAGGTTGCCGACATCCATGCACAACTAGAAAACAT
CCTTAGTGTACACTAAACCAGAAATGTATTACCATTGATGCAGTAATAGC
TTTCATCACTAAATACTGAAAATAAAATTGAAGTATTTCTGTAGATTCAT
CTGGCAATGTTAACTTCACAGCAAGCTGACACTACTCACTCACAATTCAC
CACAATGGGAAACAGATCCATGCTGGTGTTACAGACAATCTCATCCTAGC
ACTACTCAAAAGCCACAGGGCTCACCTCGGATTACGATTTGTTTATAGCA
AAGTGCATACAGAGATTACAAAAATTTTAAGGACAAAAGAAATAGAAAGT
AAGGTCCTATTTTGTGGTCCCATCAACAAACTCAAAAATCTGATAGATGG
AGGCTCCAACGAGCTTTTTTTTTTATAAATACTTTAGTTTAGGTACAGTT
ATACAGAAAGTCGAGTTTGTTTCAAATCTTCAAAAACAAAAAAGTTCCTG
TTATTCCTCAAATGGTGCTTGTTATGGTTTAACATTTCTGTTAAATGTGT
GTGTTGAGTTACTTGTTATCCAAGCGTAGCAGGTGCTCCTTACCATTTAT
TGTCAAGGACTTTAACTGCCCATN

CATTGCAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCCACGATTACAGGAAACTAACA
AACCAAAAATAAAGGTGGGATGAAAAAGCTGTTGAAGGCAAGATTCCATT
TTGAGTTGCCATATGGACACGGTAGAAAATACCTCCACATTTCATTTTAA
ATGCCACTTTTAATTACTGTATGACTGAAATGATGTTAACAGACATTTTC
TTTATAAAATTAATTTTTCACAGTGAACCAGTACCAGTCAGAGCTCAAAT
AGCTAGTTCATATTTTTCGAAGAGTTCCGTCATAAGATGGTAGATAATTA
CCAATTGCAGTGCCTGGTATCAACAGTGACACTTGAAGCTTGAAAGGTAC
ATGTGATAATCTATGTAAGATGAATCAAAAACACAGGCTCTACTCTATAA
ATGTGAAATTCATATGATTGTAATAAATGATTTATGTTCAATTGAATATA
GTAAATGAACACATTGTCAGCTCCCACATATTTAAAGCACATGAGAATTG
CTGTGGTATAATCTATTTATCCCATGAATATATCATAATGGAAAATATAA
GAAGCTTATTATCTAATTTTTGGATATTTCTCATTGTCAGTACTTGACTA
TCCAAGAACTTGTAACGTCTTTTCCCTTGAGGCAAAACAAACATTTGTGT
TTAGATATTAGATTTCAAACTATATAGTACTATGAATTTGGTATCAAAAT
ATCATAGAAGTATGAGACCTA

Query= MSMg01no518_b23.g1 MSMg01no518_b23.g1 CHROMAT_FILE:
MSMg01no518_b23.g1 PHD_FILE: MSMg01no518_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:26 2005
         (696 letters)



>mm_chr1_47604296_47605391
          Length = 1096

 Score = 1276 bits (660), Expect = 0.0
 Identities = 687/696 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actccacgattacaggaaactaacaaaccaaaaataaaggtgggatgaaaaagctgttga 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 actcgacgattacaggaaactaacaaaccaaaaataaaggtgggatgaaaaagctgttga 837

                                                                       
Query: 61  aggcaagattccattttgagttgccatatggacacggtagaaaatacctccacatttcat 120
           |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 836 aggcaagattccattttgagttgccatatgaacacggtaggaaatacctccacatttcat 777

                                                                       
Query: 121 tttaaatgccacttttaattactgtatgactgaaatgatgttaacagacattttctttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tttaaatgccacttttaattactgtatgactgaaatgatgttaacagacattttctttat 717

                                                                       
Query: 181 aaaattaatttttcacagtgaaccagtaccagtcagagctcaaatagctagttcatattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aaaattaatttttcacagtgaaccagtaccagtcagagctcaaatagctagttcatattt 657

                                                                       
Query: 241 ttcgaagagttccgtcataagatggtagataattaccaattgcagtgcctggtatcaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttcgaagagttccgtcataagatggtagataattaccaattgcagtgcctggtatcaaca 597

                                                                       
Query: 301 gtgacacttgaagcttgaaaggtacatgtgataatctatgtaagatgaatcaaaaacaca 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gtgacacttgaagcgtgaaaggtacatgtgataatctatgtaagatgaatcaaaaacaca 537

                                                                       
Query: 361 ggctctactctataaatgtgaaattcatatgattgtaataaatgatttatgttcaattga 420
            ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 536 agctctactctaaaaatgtgaaattcatacgattgtaataaatgatttatgttcaattga 477

                                                                       
Query: 421 atatagtaaatgaacacattgtcagctcccacatatttaaagcacatgagaattgctgtg 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 476 atatagtaaatgaacacattgtcggctcccacatatttaaagcacatgagaattgctgtg 417

                                                                       
Query: 481 gtataatctatttatcccatgaatatatcataatggaaaatataagaagcttattatcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gtataatctatttatcccatgaatatatcataatggaaaatataagaagcttattatcta 357

                                                                       
Query: 541 atttttggatatttctcattgtcagtacttgactatccaagaacttgtaacgtcttttcc 600
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 acttttggatatttctcattgtcagtacttgactatccaagaacttgtaacgtcttttcc 297

                                                                       
Query: 601 cttgaggcaaaacaaacatttgtgtttagatattagatttcaaactatatagtactatga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cttgaggcaaaacaaacatttgtgtttagatattagatttcaaactatatagtactatga 237

                                               
Query: 661 atttggtatcaaaatatcatagaagtatgagaccta 696
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 atttggtatcaaaatatcatagaagtatgagaccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)