CCCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTTAGTGCAGTAG
CTGGATATAAAATTACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGA
ATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTGTCAATAGTC
ACAAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGAAAGA
TCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGTTC
TCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATT
GTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCC
CATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCA
AATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAG
GATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTA
CAGAGCAATTGTGGTAAAAACTGCATGGTACTGGTATAGAGACAGACAAG
TAGACCAATGGAATAGAATTGAAGACCTAGAAATGAACCCACACACCTAT
GGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAACAAAGA
CAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAA
GAATGCGAATCGATCCATACTTATCTCN

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGATAAAAGAGATATTTTATTA
AAATATTTACTTTATCATGTGATCATAAATTGAGCTTTCCTGAGACACTG
TCTTTCAAATCCCTCCCAACTTTAAAGCCTTTGTCATACAGTCCAGGAGG
TTCTGTTTCGTTTTGTGATAGAGTTGGTACATAGGACAGGCACATTTGTG
CTCAATGGATTGCTTCTGGGGATTGCTGTTTTGTGTGGGGCACCAATTTA
GTCAATAGGGCAGTGCACTCTGCTCCCCACTCTGTTCCTAGCTTCCTCCT
GGGTCCTATGAATAGTACAGCAGGGGATGGCTCTGATGAACTGATCATTG
CCCCAAAATAGATCATGAATATCATAGAAGGGACGTATCCTGGAATTGTA
AAAAAGTTATTTGCATTAAAATAAGCTTTACGTATTTAAAAGTATGCTAT
AAATGTACTGGATGGTTTTGTGGGTCATCTTGACACAAGCTGGAGTTATC
ACAGAGAATGGAGCTTCAGGTAAGGAAATACCTCCACGAGATCCAGCTAT
AATGCTTTTTCACAATTAGTGATCAAGGGGGGAGGGCCCATTTTGAGTAG
TGCCATCCTTGGCCTGGTGGTCTTGAGTTCTATAAGAGAACAAGCTGAGC
AAGGCAGGGGAAGCAAGCCAGTAAGAAACATCCCTCCATGGCCTCTGCAT
CAGCTCCTGCTTCCTGGCCTGCTTGAGN

Query= MSMg01no518_b24.g1 MSMg01no518_b24.g1 CHROMAT_FILE:
MSMg01no518_b24.g1 PHD_FILE: MSMg01no518_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:26 2005
         (611 letters)



>mm_chr1_48230264_48231274
          Length = 1011

 Score = 1060 bits (548), Expect = 0.0
 Identities = 596/612 (97%), Gaps = 1/612 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgataaaagagatattttattaaaatatttactttatcatgtgatcataaattgagct 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgataaaagagatattttgttaaaatatttactttatcatgtgatcataaattgagct 260

                                                                       
Query: 61  ttcctgagacactgtctttcaaatccctcccaactttaaagcctttgtcatacagtccag 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcccgagacactgtctttcaaatccctcccaactttaaagcctttgtcatacagtccag 320

                                                                       
Query: 121 gaggttctgtttcgttttgtgatagagttggtacataggacaggcacatttgtgctcaat 180
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gaggttctgtttcattttgtgatagagttggtacataggacaggcacatttgtgttcaat 380

                                                                       
Query: 181 ggattgcttctggggattgctgttttgtgtggggcaccaatttagtcaatagggcagtgc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct: 381 ggattgcttctggggattgctgctttgtgtggggcaccaatttagtcaatagggcagtgt 440

                                                                       
Query: 241 actctgctccccactctgttcctagcttcctcctgggtcctatgaatagtacagcagggg 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 actctgctccccactctgttcctagcttcctcctgggtcctgtgaatagtacagcagggg 500

                                                                       
Query: 301 atggctctgatgaactgatcattgccccaaaatagatcatgaatatcatagaagggacgt 360
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 501 atggctctgatgaactgatcattgacccaaaataggtcatgaatatcatagaagggacgt 560

                                                                       
Query: 361 atcctggaattgtaaaaaagttatttgcattaaaataagctttacgtatttaaaagtatg 420
           |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 atcctggaatggtaaaaaagttatttgcattaaaataagctttacgtattcaaaagtatg 620

                                                                       
Query: 421 ctataaatgtactggatggttttgtgggtcatcttgacacaagctggagttatcacagag 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctataaatgtcctggatggttttgtgggtcatcttgacacaagctggagttatcacagag 680

                                                                       
Query: 481 aatggagcttcaggtaaggaaatacctccacgagatccagctataatgctttttcacaat 540
           ||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||
Sbjct: 681 aatggagcttcaggtaagggaatacctccatgagatccagctacaatgctttttcacaat 740

                                                                       
Query: 541 tagtgatcaa-ggggggagggcccattttgagtagtgccatccttggcctggtggtcttg 599
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagtgatcaacggggggagggcccattttgagtagtgccatccttggcctggtggtcttg 800

                       
Query: 600 agttctataaga 611
           ||||||||||||
Sbjct: 801 agttctataaga 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)