BAC Information

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BAC

Clone NameMSMg01-518C24
Chromosome1 (Build37)
Map Location 169,883,989 - 170,027,266
singlet/doubletdoublet
Overlap genenone
Upstream geneC030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genePbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518C24.T7 (MSMg01no518_c24.b1)MSMg01-518C24.TJ (MSMg01no518_c24.g1)
ACCAG589755AG589756
length783776
length of high quality
(start - end)		605 (49 - 653)580 (78 - 657)
definitionCHROMAT_FILE: MSMg01no518_c24.b1 PHD_FILE: MSMg01no518_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:31 2005CHROMAT_FILE: MSMg01no518_c24.g1 PHD_FILE: MSMg01no518_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,883,989 - 169,884,589)(170,026,687 - 170,027,266)
sequence
NNCTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTACAGACATAGGAAGGACAATTCTCAACTTCATATGGAAA
ACAAAAAGACCCAGGATAACTAAAACAATCCTGAAGAATAAAAGAACTGT
CAGTTCTATCACCATTCCTGATTTCAAGTTGTACTACAGAGCTATAGTAA
TAAAAGCCTCATGGTATTCGCATACAATAGATACATTGATCAATGGAATA
AAATTGAAGACCCAGACATAAATTCACACACCTATGGACATCTGATTTTT
CATGAAGAAGGTAAAAATACACACTGGACAAAAGACAGCATCTTCAACAA
ATGGTGCCTGTCCAACTGGATATCTGCATGTAGAAGAATGCAAATGGATC
CATACTTATTATCATCCTACACAAAACTCAAGCCCTAGTAGATCAAAGAC
CTCAACATAAAACCAGATGCACTGAACCTGATAAAAGAGAATCTGGGGAA
TAGCCTTGAACACATTGGCACAGGAGATGACTTTCTCAACAGACATTCTA
GTTTTTAGAGTTGCATGGTTGCTCTTTTTTGAGGTTGAGCTTGATTCTAG
ACTGGAGTATTAAACATTATTTTTATGTAATTGCTAATAGGAACTAAACC
AGTCACCATGGTTCTATCATATGGGTTTTCCTCTTGTTTCTTGGACATCC
TTTGGATACTCTTTCTTCAAGAATTTTACATGGGTTGGGACTGGGGCATA
CTTTTCTCTAGGAGTGGCTCACTCACTTCTCTT

NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTAGTCAATAACGCTGAGAT
GCGGAAGACAGCTGAGTGACCTCTGATTGCATCTGTGCCTCTTGGTTTAT
TGAGGGATTCAAGACTTGATGGTAAAAATCATCATATTGGTTTTCAAAGC
TGCATTTCTGTAAGTTTGTATAAACTGGAAAGAATATTGCTTCACTTGTG
CAACGCGGAAAGACCATCCAGTGCACATTAAGTCTATATGATCTTGGTTG
AAGGAAGACATTTTGACAACGGAGACCACTGAGATGATGCAGGGGAAGGG
AGAAGGGTTGATTTGGATGCCATGGGTTACAAGACCCAGCTAGATCTTTT
TTTCCACCAGGAGAGACTTTAGGGCAAGAACATGAAGAAGCATGGTGATA
AAAAGACTGTCACCAAGTGTGCACTTTAAGACCTTCATGAAAATTGCATT
CAAGATTGACAGTGGTCCAGCCTACCCTCCCCAGCTCCACCCACAGCCTC
ACCAATGCAGGATACTTATGCTTCCAAAGGGGTCATCTTATGGATGGAGG
CAGCACATAATGAAGAAACTAGAGTGAAAGAGATTTGTGTTTCTAAGCTT
ATATGAGACACGCCAACATTTCAGGACACACCTAGAGCTGAATCCCAGGT
GAGTAACTGGGGCAGAATCTGTCTTAAGTTGTATACACAAATCTGTTTGT
AGAAATATTAACCTCCTCCCTTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_c24.b1 MSMg01no518_c24.b1 CHROMAT_FILE:
MSMg01no518_c24.b1 PHD_FILE: MSMg01no518_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:31 2005
         (605 letters)



>mm_chr1_169883785_169884789
          Length = 1005

 Score = 1108 bits (573), Expect = 0.0
 Identities = 594/601 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttacagacataggaaggacaattctcaacttcatatggaaaacaaaaagaccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttacagacataggaaggacaattctcaacttcatatggaaaacaaaaagaccc 264

                                                                       
Query: 65  aggataactaaaacaatcctgaagaataaaagaactgtcagttctatcaccattcctgat 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggataactaaaacaatcttgaagaataaaagaactgtcagttctatcaccattcctgat 324

                                                                       
Query: 125 ttcaagttgtactacagagctatagtaataaaagcctcatggtattcgcatacaatagat 184
           |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 ttcaagttgtactatagagctatagtaataaaaacctcatggtattcgcatacaatagat 384

                                                                       
Query: 185 acattgatcaatggaataaaattgaagacccagacataaattcacacacctatggacatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acattgatcaatggaataaaattgaagacccagacataaattcacacacctatggacatc 444

                                                                       
Query: 245 tgatttttcatgaagaaggtaaaaatacacactggacaaaagacagcatcttcaacaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 tgatttttcatgaagaaggtaaaaatacacactggacaaaagacagcatcttcgacaaat 504

                                                                       
Query: 305 ggtgcctgtccaactggatatctgcatgtagaagaatgcaaatggatccatacttattat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtgcctgtccaactggatatctgcatgtagaagaatgcaaatggatccatacttattat 564

                                                                       
Query: 365 catcctacacaaaactcaagccctagtagatcaaagacctcaacataaaaccagatgcac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catcctacacaaaactcaagccctagtagatcaaagacctcaacataaaaccagatgcac 624

                                                                       
Query: 425 tgaacctgataaaagagaatctggggaatagccttgaacacattggcacaggagatgact 484
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 625 tgaacctgataaaagagaatctgggggatagctttgaacacattggcacaggagatgact 684

                                                                       
Query: 485 ttctcaacagacattctagtttttagagttgcatggttgctcttttttgaggttgagctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttctcaacagacattctagtttttagagttgcatggttgctcttttttgaggttgagctt 744

                                                                       
Query: 545 gattctagactggagtattaaacattatttttatgtaattgctaataggaactaaaccag 604
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gattctagactggattattaaacattatttttatgtaattgctaataggaactaaaccag 804

            
Query: 605 t 605
           |
Sbjct: 805 t 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no518_c24.g1 MSMg01no518_c24.g1 CHROMAT_FILE:
MSMg01no518_c24.g1 PHD_FILE: MSMg01no518_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:31 2005
         (580 letters)



>mm_chr1_170026487_170027466
          Length = 980

 Score = 1106 bits (572), Expect = 0.0
 Identities = 578/580 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtagtcaataacgctgagatgcggaagacagctgagtgacctctgattgcatctgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 780 tctgtagtcaataacgctgagatgcggaagacagctgagtgacctctggttgcatctgtg 721

                                                                       
Query: 61  cctcttggtttattgagggattcaagacttgatggtaaaaatcatcatattggttttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 cctcttggtttattgagggattcaagacttgatggtaaaaatcatcatattggttttcaa 661

                                                                       
Query: 121 agctgcatttctgtaagtttgtataaactggaaagaatattgcttcacttgtgcaacgcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 agctgcatttctgtaagtttgtataaactggaaagaatattgcttcacttgtgcaacgcg 601

                                                                       
Query: 181 gaaagaccatccagtgcacattaagtctatatgatcttggttgaaggaagacattttgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gaaagaccatccagtgcacattaagtctatatgatcttggttgaaggaagacattttgac 541

                                                                       
Query: 241 aacggagaccactgagatgatgcaggggaagggagaagggttgatttggatgccatgggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aacggagaccactgagatgatgcaggggaagggagaagggttgatttggatgccatgggt 481

                                                                       
Query: 301 tacaagacccagctagatctttttttccaccaggagagactttagggcaagaacatgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tacaagacccagctagatctttttttccaccaggagagactttagggcaagaacatgaag 421

                                                                       
Query: 361 aagcatggtgataaaaagactgtcaccaagtgtgcactttaagaccttcatgaaaattgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aagcatggtgataaaaagactgtcaccaagtgtgcactttaagaccttcatgaaaattgc 361

                                                                       
Query: 421 attcaagattgacagtggtccagcctaccctccccagctccacccacagcctcaccaatg 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 360 attcaagattgacagtggtccagcctaccctccccagctccatccacagcctcaccaatg 301

                                                                       
Query: 481 caggatacttatgcttccaaaggggtcatcttatggatggaggcagcacataatgaagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 caggatacttatgcttccaaaggggtcatcttatggatggaggcagcacataatgaagaa 241

                                                   
Query: 541 actagagtgaaagagatttgtgtttctaagcttatatgag 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 actagagtgaaagagatttgtgtttctaagcttatatgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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