Query= MSMg01no518_f24.b1 MSMg01no518_f24.b1 CHROMAT_FILE:
MSMg01no518_f24.b1 PHD_FILE: MSMg01no518_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:45 2005
(641 letters)
>mm_chr1_129867309_129868349
Length = 1041
Score = 1164 bits (602), Expect = 0.0
Identities = 629/638 (98%), Gaps = 2/638 (0%)
Strand = Plus / Plus
Query: 5 gaattcactatgcttctgagaacaaccttgaacgtctgtcttgctgctgctacctcccag 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactatgcagctgagaacaaccttgaacgtctgtcttgctgctgctacctcccag 264
Query: 65 tgtgtaccgccacacctggttcatgtttatgcccagctagcaacccagcatttcctagct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgtaccgccacacctggttcatgtttatgcccagctagcaacccagcatttcctagct 324
Query: 125 cagctgacaactgtc-aacaattctcagactagctcaccgagtgtacaccatcctgggtc 183
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagctgacaactgtccaacaattctcagactagctcaccgagtgtacaccatcctgggtc 384
Query: 184 ctaggcttcactggcacctggggattggtcttgcagccggaacaaagaaactagagacac 243
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 ctaggcttcactggcacctggggattggtcttgcagccagaacaaagaaactagagacac 444
Query: 244 acaagaagagaagccctctgactgctgacttctgtgtctatttaaaggctatgaaatcag 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 acaagaagagaagccctctgactgctgactactgtgtctatttaaaggctatgaaatcag 504
Query: 304 atcagacagcatgtactctaagacacttcttgggaagactctgagagaaggaaaaggaag 363
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcagacagcatgtactccaagacacttcttgggaagactctgagagaaggaaaaggaag 564
Query: 364 gctaaggagaaaagaaaagaggaacccccccaccctgttttgttttgagatagtttccct 423
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 gctaaggagaaaagaaaagaggaacccccc-accctgttttgttttgagatagtttccct 623
Query: 424 gtgtagacctcaaactcagagatccacctgcctctgcctcttgagtactgggattaaagg 483
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 624 gtgtagacctcaaactcagagatccacctgcctctgcctcttgagtgctgggattaaagg 683
Query: 484 tgtgtgtcaccactgccagttagggtttttgttttttgtttttaaagatttatttatttt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgtgtgtcaccactgccagttagggtttttgttttttgtttttaaagatttatttatttt 743
Query: 544 atgtatgtgagtatactgtagctatcttcagacacacgagaagagggcatctgatcccat 603
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 744 atgtatgtgagtatactgtagctatcttcagacacaccagaagagggcatctgatcccat 803
Query: 604 tacagatggttgtgagccaccatgtgtttacagggaat 641
||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tacagatggttgtgagccaccatgtgtttacagggaat 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_f24.g1 MSMg01no518_f24.g1 CHROMAT_FILE:
MSMg01no518_f24.g1 PHD_FILE: MSMg01no518_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:46 2005
(669 letters)
>mm_chr1_130033661_130034729
Length = 1069
Score = 1286 bits (665), Expect = 0.0
Identities = 668/669 (99%)
Strand = Plus / Minus
Query: 1 aggttttgtgcaggctaagcatgcactattctactgagctacattatcaaaagcttagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aggttttgtgcaggctaagcatgcactattctactgagctacattatcaaaagcttagta 648
Query: 61 tttcctccctgctgaatatataattagcctgtagctacattaagaaagatttccgtgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tttcctccctgctgaatatataattagcctgtagctacattaagaaagatttccgtgcct 588
Query: 121 gataactcattcattacctaagattagtgtaataatgctcctctctttttgctatcaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gataactcattcattacctaagattagtgtaataatgctcctctctttttgctatcaata 528
Query: 181 aaaaatgtgtagtatgctaactaggtatctgccttggtacttgtgataaataacctccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aaaaatgtgtagtatgctaactaggtatctgccttggtacttgtgataaataacctccca 468
Query: 241 aagagatatcaaaatggaaaagacagaggtgtgagaaatacagtagataaggactaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aagagatatcaaaatggaaaagacagaggtgtgagaaatacagtagataaggactaaatc 408
Query: 301 ctcagcattctctaagattaaaatggaatactggctttaaaccaatcaggcgatatttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctcagcattctctaagattaaaatggaatactggctttaaaccaatcaggcgatatttta 348
Query: 361 aattagtatactattatgtttctatgtaaaaattaaagataataaaatactgactcaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aattagtatactattatgtttctatgtaaaaattaaagataataaaatactgactcaatt 288
Query: 421 ataaaagaccattaaaaggcatcagtttaaaatgaaaagatttgagccagcagtggtggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ataaaagaccattaaaaggcatcagtttaaaatgaaaagatttgagccagcagtggtggt 228
Query: 481 gcatacattaatcccagcgctaggaaggcagaaacaagccaatctcttgagttcaaggcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gcatacattaatcccagcgctaggaaggcagaaacaagccaatctcttgagttcaaggcc 168
Query: 541 agcctggtctacagaatgagttccagaactatacagataaagtcttccttgaaacaacaa 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 167 agcctggtctacagaatgagttccagaactatacagataaagtcttcctcgaaacaacaa 108
Query: 601 aaacaaagagacaccatcccaaagtgaaaggaaagagtaagctgcagtaatttcatttat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 aaacaaagagacaccatcccaaagtgaaaggaaagagtaagctgcagtaatttcatttat 48
Query: 661 attacactc 669
|||||||||
Sbjct: 47 attacactc 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
