Query= MSMg01no518_g10.b1 MSMg01no518_g10.b1 CHROMAT_FILE:
MSMg01no518_g10.b1 PHD_FILE: MSMg01no518_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:47 2005
(700 letters)
>mm_chr1_78581862_78582961
Length = 1100
Score = 1307 bits (676), Expect = 0.0
Identities = 691/696 (99%)
Strand = Plus / Plus
Query: 5 gaattcccgtcatagtatccaagtgcagggattgcaggtgtgagcgaccatgactggttt 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccgtcacagtatccaagtgcagggattgcaggtgtgagcgaccatgactggttt 264
Query: 65 cttacatgttaaggaactgaacatagcagctggatgatggtagagcacacctgtagcccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttacatgttaaggaactgaacatagcagctggatgatggtagagcacacctgtagcccc 324
Query: 125 agaacttgggaggcagaggcaggcagacctctgagttcaaggccagcctggtctacacag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaacttgggaggcagaggcaggcagacctctgagttcaaggccagcctggtctacacag 384
Query: 185 ttagttccaggtcagccagggatacatagaaaatccctgtctcaattaatttgttaaaat 244
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttagttccagatcagccagggatacatagaaaatccctgtctcaattaatttgttaaaat 444
Query: 245 aaaataaaaataaaaaataaaaaagaagctcaacatagcaaacattggccttatgtttgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaataaaaataaaaaataaaaaagaagctcaacatagcaaacattggccttatgtttgc 504
Query: 305 aagaaattaaggccttattaatgctgctactgctgtgtgcatccagcattctcaaatgta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagaaattaaggccttattaatgctgctactgctgtgtgcatccagcattctcaaatgta 564
Query: 365 gtgttggctggtaaaaagtgggttttggaaagcccttccttgccatttccctcttctaca 424
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgttggctggtaaaaagtgggtgttggaaagcccttccttgccatttccctcttctaca 624
Query: 425 ctagcctcactccaaccagatgttggcttttgtggccattatttgtgttctgtgccatct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctagcctcactccaaccagatgttggcttttgtggccattatttgtgttctgtgccatct 684
Query: 485 taggatggcccgataatttttgttcaaacccaacgatgtgagctaaattgtgtctctcag 544
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taggatggccccataatttttgttcaaacccaacgatgtgagctaaattgtgtctctcag 744
Query: 545 gaaatcttaacacccaggacctcaggatgagactacttggaaaccgggtttctgcagagg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaaatcttaacacccaggacctcaggatgagactacttggaaaccgggtttctgcagagg 804
Query: 605 tggtcttttaaaaatgaagtcactggagttgagtcccaatccatagatgacagacatatt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tggtcttttaaaaatgaagtcactggagttgagtcccaatccatagatgacagacatatt 864
Query: 665 tataaaaagggagagatttatgtacagggacagatt 700
|||||||||||||||||||| |||||||||||||||
Sbjct: 865 tataaaaagggagagatttaggtacagggacagatt 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_g10.g1 MSMg01no518_g10.g1 CHROMAT_FILE:
MSMg01no518_g10.g1 PHD_FILE: MSMg01no518_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:47 2005
(672 letters)
>mm_chr1_78707200_78708281
Length = 1082
Score = 1170 bits (605), Expect = 0.0
Identities = 659/685 (96%), Gaps = 16/685 (2%)
Strand = Plus / Minus
Query: 1 ccagtaagaag-aactgtgaaggcctggggaaaagctgtagctttggattgtcccccccc 59
||||||||||| ||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct: 882 ccagtaagaagaaactgtgaaggcccggggaaaagctgtagctgtgga---tcccccccc 826
Query: 60 ----ccaatcccatctgaaagtccccagatagaaaatctattcatatacatctgcaaccc 115
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 825 ccctccaatcccatctgaaagtccccagatagaaaatctattcgtatacatctgcaaccc 766
Query: 116 ccacagaagcatactaaaaagaaagcttctaagagtggcatactcgatgaagtactcaag 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ccacagaagcatactaaaaagaaagcttctaagagtggcatactcgatgaagtactcaag 706
Query: 176 ctaggatcatgtttttatttaataataaaacccacatgggagaaaaactcttgctttctt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctaggatcatgtttttatttaataataaaacccacatgggagaaaaactcttgctttctt 646
Query: 236 caaagggaatgaggactgatatgaaaaggaaccaccagtgggagacgtgttattcccatg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 caaagggaatgaggactgatatgaaaaggaaccaccagtgggagacgtgttattcccatg 586
Query: 296 gtgtcaccagataagaacactagatggataaaggtgggtaagacaccagctccatacacc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gtgtcaccagataagaacactagatggataaaggtgggtaagacaccagctccatacacc 526
Query: 356 ttctctggaggccacatcatgttgaggcactgggtttactgagccaattctgaatgtatg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttctctggaggccacatcatgttgaggcactgggtttactgagccaattctgaatgtatg 466
Query: 416 agcctttaacttacacttgagacaatagcaaggaagggatgcatctgggtgaagtgtgca 475
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 465 agcctttaacttacatttgagacaatagcaaggaagggatgcatctgggtaaagtgtgca 406
Query: 476 tgtgcgtgttatagtatgtcatcatctattcagagtttggatcttgtgtgtgt------- 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgtgcgtgttatagtatgtcatcatctattcagagtttggatcttgtgtgtgtgtgagtg 346
Query: 529 -gtgagtgagatagagagacagagatagtatgtcttcatctattcacagtttggatcata 587
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 345 agtgagtgagagagagagatagagatagtatgtcttcatctattcacagtttggatctta 286
Query: 588 ggtgtcgctcatacgttttgaagggtggcactacaggaagctgaggctttatgggagcat 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 285 ggtgtcgctcatacgttttgaagggtggcactacaggaagctgaggctttatgggaacat 226
Query: 648 atttggctgctgagggcatttatct 672
||||||||||||||| |||||||||
Sbjct: 225 atttggctgctgaggacatttatct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1082
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1072
Effective search space: 709664
Effective search space used: 709664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
