BAC Information

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BAC

Clone NameMSMg01-518G22
Chromosome1 (Build37)
Map Location 142,567,222 - 142,648,826
singlet/doubletdoublet
Overlap genenone
Upstream geneEG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518G22.T7 (MSMg01no518_g22.b1)MSMg01-518G22.TJ (MSMg01no518_g22.g1)
ACCAG589942AG589943
length792788
length of high quality
(start - end)		583 (48 - 630)550 (85 - 634)
definitionCHROMAT_FILE: MSMg01no518_g22.b1 PHD_FILE: MSMg01no518_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:50 2005CHROMAT_FILE: MSMg01no518_g22.g1 PHD_FILE: MSMg01no518_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,648,249 - 142,648,826)(142,567,222 - 142,567,771)
sequence
NCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATGCAGCATGAAAGTAGCATATTAGAGATTATTATTTCTTAGTCAAA
TTGATAATGTTTGAGCTAACGACTTTATCTAAAGGAAACTATTGTTTGAG
GTCTAATGAGTTCATTGTTTCCATGTTTTGGCATCGGCTCACTTTATACA
AAGATACTATACATTTCATAGTGCTGGGAAAACCATCACAGCTGCATTTA
GAGAATGGTACTTTGTATTTATTGTAGTCCCAGTTGAGAGAACAATTCTC
ATTTGTAGGAAGACATTACTAAAATGAATTGAGGAAAACTGCCATACCTG
AATATTGCTGAATTTTTCAGACTCTAATATTTTTATTGTAAATATTTTCT
GGGTCTTCTTACTACTTTTCTATTAATTATTATTAGCAGTGAGATATGTA
AAATCCAATACATTTTATTTATTATATTTTTACTGATTCTTTGACAGTGT
CTTACAGAGTACTTTGATAATATTTCATTCCATTTCCTCCTCTGACTCCT
ACCAAATTCACCTTCACCTCTGTAATCCCTCCTCATGTCCTGTGCTTTCC
TTTTAATGAATCATTGACTTCAACTTGTGCTGCCAATATACTCATGTGTG
AGATACTGCATTTGGAAATATCTCCTCAGAGAGATCTATCTGATCTATCT
AAGCAAAGCCACCTACTANTCATAGAGCCTTTATTAAGGGTGAGAAGTCA
TAANGCCCTCACACTTAGTGCTAGAATACTAACTAGCTTGAN

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGTTTATGTTTCAA
TGTTGATTTTGATAAATTTGAGTGTATATCTAAATTATACTGGAAATAAA
CCAAGATACATTGGAAGCCAATGAGCAATTTAAATGTGGTGTTAGAAATT
GCAACTAATTGCTATGTATAATCAAATTTCATATTGATCACCTCTTTAAA
TAATAAGGTTTGAGACAGAAATGTGAATCTATATACAGATTTTATAGTGT
TATGAATTTTTCTATAATGTATTTTGCTTTTTCCTCCTTCTATAGCCAAT
TTAGATAAATCGTATTGAAACAATATGACAAAGTGTTGTATCTTAATCTA
CACATTAAACAAAAAATGTTTTCAAATATTCTTTACTTTAACTCTATGTG
GTTTAAGACTGTAAGTAAAATACACAGATAAAGTAGAACCATATTTTATC
ATGGAATTTGAACTCCATATCTCTCTTTTTAGGATCCTACAACTTACATG
CTTGAGTAAAAAGATGAACCCAACAAAGCTGAATACAGAAGATAATTATT
TCCCAGAATCTCTTGGACATTCCATTTAACCTCAGACTACAGAAGGATAT
TGCCCTATAGATGAAAGGATGCCACTTGTATGTATGAGGGGACATCACCC
ATTTTAGCAGATAATGGGTTTGTGATCTCAAAGGCTTAGTCTTNCACTTA
GTGCTAATGGGGAAGTAAAATGGCTGCCNAGATGTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_g22.b1 MSMg01no518_g22.b1 CHROMAT_FILE:
MSMg01no518_g22.b1 PHD_FILE: MSMg01no518_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:50 2005
         (583 letters)



>mm_chr1_142648213_142649195
          Length = 983

 Score = 1087 bits (562), Expect = 0.0
 Identities = 574/578 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aatgcagcatgaaagtagcatattagagattattatttcttagtcaaattgataatgttt 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aatgcagcatgaaagtagcatattagagattattatttcttagtcaaattgataatgttt 555

                                                                       
Query: 66  gagctaacgactttatctaaaggaaactattgtttgaggtctaatgagttcattgtttcc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gagctaacgactttatctaaaggaaactattgtttgaggtctaatgagttcattgtttcc 495

                                                                       
Query: 126 atgttttggcatcggctcactttatacaaagatactatacatttcatagtgctgggaaaa 185
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 494 atgttttggcatcggctcactttaaacaaagatactatacatttcatagtgctgggaaaa 435

                                                                       
Query: 186 ccatcacagctgcatttagagaatggtactttgtatttattgtagtcccagttgagagaa 245
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccatcacagctgcatttaaagaatggtactttgtatttattgtagtcccagttgagagaa 375

                                                                       
Query: 246 caattctcatttgtaggaagacattactaaaatgaattgaggaaaactgccatacctgaa 305
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 caattctcattggtaggaagacattactaaaatgaattgaggaaaactgccatacctgaa 315

                                                                       
Query: 306 tattgctgaatttttcagactctaatatttttattgtaaatattttctgggtcttcttac 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tattgctgaatttttcagactctaatatttttattgtaaatattttctgggtcttcttac 255

                                                                       
Query: 366 tacttttctattaattattattagcagtgagatatgtaaaatccaatacattttatttat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tacttttctattaattattattagcagtgagatatgtaaaatccaatacattttatttat 195

                                                                       
Query: 426 tatatttttactgattctttgacagtgtcttacagagtactttgataatatttcattcca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tatatttttactgattctttgacagtgtcttacagagtactttgataatatttcattcca 135

                                                                       
Query: 486 tttcctcctctgactcctaccaaattcaccttcacctctgtaatccctcctcatgtcctg 545
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 134 tttcctcctctgactcctaccaaattcaccttcacctctgtaatcccttctcatgtcctg 75

                                                 
Query: 546 tgctttccttttaatgaatcattgacttcaacttgtgc 583
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 74  tgctttccttttaatgaatcattgacttcaacttgtgc 37


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no518_g22.g1 MSMg01no518_g22.g1 CHROMAT_FILE:
MSMg01no518_g22.g1 PHD_FILE: MSMg01no518_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:50 2005
         (550 letters)



>mm_chr1_142567022_142567971
          Length = 950

 Score = 1056 bits (546), Expect = 0.0
 Identities = 549/550 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagtttatgtttcaatgttgattttgataaatttgagtgtatatctaaattatactgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagtttatgtttcaatgttgattttgataaatttgagtgtatatctaaattatactgga 260

                                                                       
Query: 61  aataaaccaagatacattggaagccaatgagcaatttaaatgtggtgttagaaattgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaaccaagatacattggaagccaatgagcaatttaaatgtggtgttagaaattgcaa 320

                                                                       
Query: 121 ctaattgctatgtataatcaaatttcatattgatcacctctttaaataataaggtttgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaattgctatgtataatcaaatttcatattgatcacctctttaaataataaggtttgag 380

                                                                       
Query: 181 acagaaatgtgaatctatatacagattttatagtgttatgaatttttctataatgtattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagaaatgtgaatctatatacagattttatagtgttatgaatttttctataatgtattt 440

                                                                       
Query: 241 tgctttttcctccttctatagccaatttagataaatcgtattgaaacaatatgacaaagt 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tgctttttcctccttctatagccaatttagataaatcatattgaaacaatatgacaaagt 500

                                                                       
Query: 301 gttgtatcttaatctacacattaaacaaaaaatgttttcaaatattctttactttaactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgtatcttaatctacacattaaacaaaaaatgttttcaaatattctttactttaactc 560

                                                                       
Query: 361 tatgtggtttaagactgtaagtaaaatacacagataaagtagaaccatattttatcatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgtggtttaagactgtaagtaaaatacacagataaagtagaaccatattttatcatgg 620

                                                                       
Query: 421 aatttgaactccatatctctctttttaggatcctacaacttacatgcttgagtaaaaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatttgaactccatatctctctttttaggatcctacaacttacatgcttgagtaaaaaga 680

                                                                       
Query: 481 tgaacccaacaaagctgaatacagaagataattatttcccagaatctcttggacattcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaacccaacaaagctgaatacagaagataattatttcccagaatctcttggacattcca 740

                     
Query: 541 tttaacctca 550
           ||||||||||
Sbjct: 741 tttaacctca 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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