Query= MSMg01no518_i03.b1 MSMg01no518_i03.b1 CHROMAT_FILE:
MSMg01no518_i03.b1 PHD_FILE: MSMg01no518_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:56 2005
(684 letters)
>mm_chr1_130033650_130034733
Length = 1084
Score = 1286 bits (665), Expect = 0.0
Identities = 676/680 (99%)
Strand = Plus / Minus
Query: 5 gaattcaggttttgcgcaggctaagcatgcactattctactgagctacattatcaaaagc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaattcaggttttgtgcaggctaagcatgcactattctactgagctacattatcaaaagc 665
Query: 65 ttagtatttcctccctgctgaatatataattagcctgtagctacattaagaaagatttcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttagtatttcctccctgctgaatatataattagcctgtagctacattaagaaagatttcc 605
Query: 125 gtgcctgataactcattcattacctaagattagtgtaataatgctcctctctttttgcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gtgcctgataactcattcattacctaagattagtgtaataatgctcctctctttttgcta 545
Query: 185 tcaataaaaaatgtgtagtatgctaactaggtatctgccttggtacttgtgataaataac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcaataaaaaatgtgtagtatgctaactaggtatctgccttggtacttgtgataaataac 485
Query: 245 ctcccaaagagatatcanaatggaaaagacagatgtgtgagaaatacagtagataaggac 304
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 484 ctcccaaagagatatcaaaatggaaaagacagaggtgtgagaaatacagtagataaggac 425
Query: 305 taaatcctcagcattctctaagattaaaatggaatactggctttaaaccaatcaggcgat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 taaatcctcagcattctctaagattaaaatggaatactggctttaaaccaatcaggcgat 365
Query: 365 attttaaattagtatactattatgtttctatgtaaaaattaaagataataaaatactgac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 attttaaattagtatactattatgtttctatgtaaaaattaaagataataaaatactgac 305
Query: 425 tcaattataaaagaccattaaaaggcatcagtttaaaatgaaaagatttgagccagcagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcaattataaaagaccattaaaaggcatcagtttaaaatgaaaagatttgagccagcagt 245
Query: 485 ggtggtgcatacattaatcccagcgctaggaaggcagaaacaagccaatctcttgagttc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggtggtgcatacattaatcccagcgctaggaaggcagaaacaagccaatctcttgagttc 185
Query: 545 aaggccagcctggtctacagaatgagttccagaactatacagataaagtcttccttgaaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 184 aaggccagcctggtctacagaatgagttccagaactatacagataaagtcttcctcgaaa 125
Query: 605 caacaaaaacaaagagacaccatcccaaagtgaaaggaaagagtaagctgcagtaatttc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 caacaaaaacaaagagacaccatcccaaagtgaaaggaaagagtaagctgcagtaatttc 65
Query: 665 atttatattacactccactg 684
||||||||||||||||||||
Sbjct: 64 atttatattacactccactg 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_i03.g1 MSMg01no518_i03.g1 CHROMAT_FILE:
MSMg01no518_i03.g1 PHD_FILE: MSMg01no518_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:56 2005
(666 letters)
>mm_chr1_129893307_129894372
Length = 1066
Score = 1226 bits (634), Expect = 0.0
Identities = 654/666 (98%), Gaps = 9/666 (1%)
Strand = Plus / Plus
Query: 1 tttctgaagatggaacacttccatctatcctgatgtaacgagactagcatcaataggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctgaagatggaacacttccatctatcctgatgtaacgagactagcatcaataggaaa 260
Query: 61 taggaaaattagacaagccctatgcagccttatttaatatattttatacctgatttttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggaaaattagacaagccctatgcagccttatttaatatattttatacctgatttttat 320
Query: 121 agtcataaactatgcaaactggttagaatggtatatcagcaactactacagcaagaatcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcataaactatgcaaactggttagaatggtatatcagcaactactacagcaagaatcg 380
Query: 181 taataacgtataacaacttcttaattaaaagctctattatggactgtgtgtgcacatgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taataacgtataacaacttcttaattaaaagctctattatggactgtgtgtgcacatgca 440
Query: 241 agagtgccatggttcattcatggaagttagaagaaaactttcaggagttgtttctctcct 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtgccatggttcattcatggaagttagaagaaaactttcaggagttgtttctctcct 500
Query: 301 tctatcatgtgggtttcagagaccaaagttaagttatcagggatggtgacaaggtcctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctatcatgtgggtttcagagaccaaagttaagttatcagggatggtgacaaggtcctta 560
Query: 361 cctgctcaactatcttgcccactctcattattgactttttaacctacctgaagacaggct 420
|||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 cctgct---------tgcccactctcattattgactttttaacctacccgaagacaggct 611
Query: 421 ctgtgtttaatgcatcttaataacactgtggtgttttgaatgagaatggtccccacagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ctgtgtttaatgcatcttaataacactgtggtgttttgaatgagaatggtccccacagac 671
Query: 481 tcaaatatctgaccgcttggtccccagttggtggaactgtttgaggattggggtgtgacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tcaaatatctgaccgcttggtccccagttggtggaactgtttgaggattggggtgtgacc 731
Query: 541 atgttgacggcaatgtgtcactgggggtgggtttggagatttcacaagcccatggcattt 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 atgttgacggcaatgtgtcactgggggtgggtttggagatttcacaagcccatggcattc 791
Query: 601 ccagttagctctctctttgcctcatggtagctgcctcaacatgtaacttcttggcaactg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ccagttagctctctctttgcctcatggtagctgcctcaacatgtaacttcttggcaactg 851
Query: 661 ctctag 666
||||||
Sbjct: 852 ctctag 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
