NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATATCCTTTGTTCTTTCTTATATGGGATAACATTAAATTTGTA
AGTTAGGCACAGTAAGGGATTAAAAACAATGATAATTAGAACAATTATGT
GATCTTGATCAATTGTTTTATTTTGAATCTGTTCTTCAACTTTCTCAAAA
TGTTTTCTCATGTTGTTTTCTTCCCAGCATGCAATGTCTATGTGATGAGG
TGGACAGGATTGCCATAAGACTGCTATTTAGTGGTTTCTTGCATATAATC
TTTGAAATGCTGCAGAAGTCACCTGGATAAAAACTGAGATAACAGTGACT
AAATCACAAGAAATTCTGTTGTGGTGCAGCTATATTGAACAGTCTAGCCT
GTTCAGACTTGCCTGCAAATTAAAATATATATCTTGATATCTAACATTTT
TCAGCAGACCACAGATAGCTGACAGTGTAGTTGGCAGGAGACTGGTGAAT
CTTTTAACTCTTATTCCCATATTCAAAGTAGATGCTGATGAGGCATGAAG
TTTCATTCCAGCCTTGAATCTGGCTCTAGAGTTTTCTATGTGAATTCTAG
AATCATTTTTTTTTTTTGTAAAAGCAAAGAGTGTTTTATTCTACAGATGT
CCAGCATTTGAGGGTCTACCATTTACCAAGATGGAGACACCCAGGTAAGC
TTGCAGGCTTAAAGCACATTAGAGGAATTTCTGGGAGGTGTAGATTT

NCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCTGGACCAGAGAACATCAGCTA
GCCTTTGAAACTCTCAAAAAGGCACTGCTGCAGGCTCCAGCATTGGCCCT
GCCAGATTTAAACAAACCTTTCACCCTATACATTGATGAAAGAAATGGAG
TGGCAAGGGGAGTCCTTACCCAGGTTTTGGGACCATGGAAGCGCCCGGTA
GCCTACTTATCAAAGAAACTGGACGCTGTGGCCAGTGGATGGCCCTCCTG
CCTGCGAGCGATAGCAGCCACGGCTGTGCTAGTAAAAGATGCTGATAAAC
TGACTATGGGCCAGAATGTTACTATAGTGGCCCCACACTCTCTTGAGAGC
ATCATCAGGCAACCACCGGACCGCTGGATGACCAACGCCCGAATGACGCA
CTACCAGAGCCTACTGCTGACAGAGCGAGTAAGTTTTGCACCCCCAGCCA
TTCTCAACCCCGCCTCCTTACTACCTGAGGCTGACAAGGCCCCTGCACAT
AAGTGTGAAGAAATACTGGCAGAAGAGACTGGAATCCGGCCAGACCTCAC
AGACCAACCTTGGCCAGGGGCAATGACTTGGTTCACGGACGGAAGCAGCT
TTGTGGTAGAAGGTAAGCGGAAGGCTGGGGCGGCAGTAGTGGATGGAAAG
GCTGTCATATGGGCCAGCAGTCTGCCGGAGGGTACATCAGCTCAAAA

Query= MSMg01no518_i09.b1 MSMg01no518_i09.b1 CHROMAT_FILE:
MSMg01no518_i09.b1 PHD_FILE: MSMg01no518_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:57 2005
         (626 letters)



>mm_chr1_7240145_7241170
          Length = 1026

 Score =  973 bits (503), Expect = 0.0
 Identities = 546/569 (95%), Gaps = 16/569 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatatcctttgttctttcttatatgggataacattaaatttgtaagttaggcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gaattctatatcctttgttctttcttatatgggataacattaaatttgtaagttaggcac 710

                                                                       
Query: 65  agtaagggattaaaaacaatgataattagaacaattatgtgatcttgatcaattgtttta 124
           ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 709 agtaaggga-taaaaacaatgataattagaacaattatgtgatcttgattaattgtttta 651

                                                                       
Query: 125 ttttgaatctgttcttcaactttctcaaaatgttttctcatgttgttttcttcccagcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttttgaatctgttcttcaactttctcaaaatgttttctcatgttgttttcttcccagcat 591

                                                                       
Query: 185 gcaatgtctatgtgatgaggtggacaggattgccataagactgctatttagtggtttctt 244
           ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||
Sbjct: 590 gcaatgtctatgtgatgagctggacaggattggcataagactgctatttagtggttcctt 531

                                                                       
Query: 245 gcatataatctttgaaatgctgcagaagtcacctggataaaaactgagataacagtgact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gcatataatctttgaaatgctgcagaagtcacctggataaaaactgagataacagtgact 471

                                                                       
Query: 305 aaatcacaagaaattctgttgtggtgcagctatattgaacagtctagcctgttcagactt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aaatcacaagaaattctgttgtggtgcagctatattgaacagtctagcctgttcagactt 411

                                                                       
Query: 365 gcctgcaaattaaaatatatatcttgatatctaacatt--------ttt-------cagc 409
           ||||||||||||||||||||||||||||||||||||||        |||       ||||
Sbjct: 410 gcctgcaaattaaaatatatatcttgatatctaacattttcagtgatttaggactgcagc 351

                                                                       
Query: 410 agaccacagatagctgacagtgtagttggcaggagactggtgaatcttttaactcttatt 469
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agaccacagatagctggcagtgtagttggcaggagactggtgaatcttttaactcttatt 291

                                                                       
Query: 470 cccatattcaaagtagatgctgatgaggcatgaagtttcattccagccttgaatctggct 529
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tccatattcaaagtagatgctgatgaggcatgaagtttcattccagccttgaatctggct 231

                                        
Query: 530 ctagagttttctatgtgaattctagaatc 558
           ||||||||| |||||||||||||||||||
Sbjct: 230 ctagagtttcctatgtgaattctagaatc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)