BAC Information

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BAC

Clone NameMSMg01-518I18
Chromosome1 (Build37)
Map Location 176,076,096 - 176,076,732
singlet/doubletsinglet
Overlap genenone
Upstream geneGA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1
Downstream geneOlfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518I18.T7 (MSMg01no518_i18.b1)MSMg01-518I18.TJ (MSMg01no518_i18.g1)
ACCAG590030AG590031
length768761
length of high quality
(start - end)
633 (50 - 682)637 (77 - 713)
definitionCHROMAT_FILE: MSMg01no518_i18.b1 PHD_FILE: MSMg01no518_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:58 2005CHROMAT_FILE: MSMg01no518_i18.g1 PHD_FILE: MSMg01no518_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTT
GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAA
CTGACCATAGGTGTGTGGGTCCATTTCTGGGTCTTCAATTCTGTTCCATT
GGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATT
GCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCT
TTTATCCTTGAGAAGAGTTTTGCTATCCTANGTTTTTTTGTATCCAAATG
AATTTTGCAATTGCTCTN
NCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAAATTTATGTCATTAAGAGAAA
TTATGATGTATTGCCAGGTATGATGGAAGATAGTCAGTGGGAAAGCTCTT
GGCTAGTATGTTCATGACCATTGGCTCAATTCTCAAAGCCAAAACAAAAA
TAAAACTTAGCTAAAAGCAATATGGTCCCAAGAAACTAAAAAAATTGAAA
TATATATTAAAAAAGGAAATAATAACTAAGGAAGTAAAATCTCCTTTCAG
AAAAAAAGTACAAAATATTATTGATGCCTTAACCAAGATGCCTGGTGGAG
CCTGAAAAGGGGAGGATGTGTTTGGTCCTGTGGTGACTTTATATCCTAGA
GCAAGGTAGTACCCAAGGAGGGCTTCCCCTTCTCTTAGGGAAAGGAAGGA
GTCATGGAGGAAAGACTTGTGAGGGTGAGACTAGGGGGAGAGAAGGGAGG
AAAGCTGCAATCAGGATGTAAAGTGAATGAATAAATAAATAAATAAATAA
ATAAATAAATAAATAAATAAATAAATAAATGGGACTAAAAGAAAAGTTAA
GAGGACATACACAAACATAGGGGGAATCTTACATTCATGTGTTATAAAAA
AGAAATAATTAAAACTCTCATAACAAATGGAAGCTTCCTCCATGCTATCT
ATATTTCACAGTGACAAACGGTGTTATATATGCTGCTGGGACAAAATAAG
CATCAACAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_i18.g1 MSMg01no518_i18.g1 CHROMAT_FILE:
MSMg01no518_i18.g1 PHD_FILE: MSMg01no518_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:58 2005
         (637 letters)



>mm_chr1_176075896_176076932
          Length = 1037

 Score = 1232 bits (637), Expect = 0.0
 Identities = 637/637 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaatttatgtcattaagagaaattatgatgtattgccaggtatgatggaagatagtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaatttatgtcattaagagaaattatgatgtattgccaggtatgatggaagatagtca 260

                                                                       
Query: 61  gtgggaaagctcttggctagtatgttcatgaccattggctcaattctcaaagccaaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgggaaagctcttggctagtatgttcatgaccattggctcaattctcaaagccaaaaca 320

                                                                       
Query: 121 aaaataaaacttagctaaaagcaatatggtcccaagaaactaaaaaaattgaaatatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaataaaacttagctaaaagcaatatggtcccaagaaactaaaaaaattgaaatatata 380

                                                                       
Query: 181 ttaaaaaaggaaataataactaaggaagtaaaatctcctttcagaaaaaaagtacaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaaaaaggaaataataactaaggaagtaaaatctcctttcagaaaaaaagtacaaaat 440

                                                                       
Query: 241 attattgatgccttaaccaagatgcctggtggagcctgaaaaggggaggatgtgtttggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attattgatgccttaaccaagatgcctggtggagcctgaaaaggggaggatgtgtttggt 500

                                                                       
Query: 301 cctgtggtgactttatatcctagagcaaggtagtacccaaggagggcttccccttctctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgtggtgactttatatcctagagcaaggtagtacccaaggagggcttccccttctctt 560

                                                                       
Query: 361 agggaaaggaaggagtcatggaggaaagacttgtgagggtgagactagggggagagaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggaaaggaaggagtcatggaggaaagacttgtgagggtgagactagggggagagaagg 620

                                                                       
Query: 421 gaggaaagctgcaatcaggatgtaaagtgaatgaataaataaataaataaataaataaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggaaagctgcaatcaggatgtaaagtgaatgaataaataaataaataaataaataaat 680

                                                                       
Query: 481 aaataaataaataaataaataaatgggactaaaagaaaagttaagaggacatacacaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaataaataaataaataaataaatgggactaaaagaaaagttaagaggacatacacaaac 740

                                                                       
Query: 541 atagggggaatcttacattcatgtgttataaaaaagaaataattaaaactctcataacaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atagggggaatcttacattcatgtgttataaaaaagaaataattaaaactctcataacaa 800

                                                
Query: 601 atggaagcttcctccatgctatctatatttcacagtg 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 801 atggaagcttcctccatgctatctatatttcacagtg 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)