Query= MSMg01no518_n08.b1 MSMg01no518_n08.b1 CHROMAT_FILE:
MSMg01no518_n08.b1 PHD_FILE: MSMg01no518_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:22 2005
(634 letters)
>mm_chr1_75518925_75519958
Length = 1034
Score = 1040 bits (538), Expect = 0.0
Identities = 544/546 (99%)
Strand = Plus / Minus
Query: 89 agtcaggtggaggaacatcatatgcctatatataattccataggatgagtcactaaagca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 agtcaggtggaggaacatcatatgcctatatataattccataggatgagtcactaaagca 975
Query: 149 gaaagatcataatttcaaggctggcttgggataccaagaaatagcagagatctcccacac 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 gaaagatcataatttcaaggctggcttgggataccaagaaatagcagagatctcccacac 915
Query: 209 ccttcactcagcttcccccaaattgacttacagaattatagtacaattatcaaaaccaga 268
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 ccttcactcagcttcccccaaattgacttacagaattatagtacaattatcaaaaccagg 855
Query: 269 aaattaggtgttgataaaatatagtgtcagttctattctgttagtgtagattatgacaac 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 aaattaggtgttgataaaatatagtgtcagttctattctgttagtgtagattatgacaac 795
Query: 329 caccaccataatcaagacacaaagtgattccatccccacaatcatatatgaactctatga 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 794 caccaccataatcaagacacaaagtgattccatccccacaatcatatatgaactctacga 735
Query: 389 ttccgagcctgggagccaagtcagatctttgctgaataataaatcttacagccttacaaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttccgagcctgggagccaagtcagatctttgctgaataataaatcttacagccttacaaa 675
Query: 449 gagatttttctatgtactagacactgagtatagacatgcacataattcaaggtgtcccct 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gagatttttctatgtactagacactgagtatagacatgcacataattcaaggtgtcccct 615
Query: 509 ggaagtctagaaaaggcacagcatgggagtaattattaacacaaaccagaaaatgaactg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ggaagtctagaaaaggcacagcatgggagtaattattaacacaaaccagaaaatgaactg 555
Query: 569 ccatcaagagactccaaggatgccatggtgggagtatatagatatggagcactaatgcca 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ccatcaagagactccaaggatgccatggtgggagtatatagatatggagcactaatgcca 495
Query: 629 tcgagg 634
||||||
Sbjct: 494 tcgagg 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_n08.g1 MSMg01no518_n08.g1 CHROMAT_FILE:
MSMg01no518_n08.g1 PHD_FILE: MSMg01no518_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:22 2005
(490 letters)
>mm_chr1_75345146_75346040
Length = 895
Score = 907 bits (469), Expect = 0.0
Identities = 487/495 (98%), Gaps = 5/495 (1%)
Strand = Plus / Plus
Query: 1 tagatcctcctgtctcagcctcccaagcatcagaattacaaggtacccccaccctcaccc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tagatcctcctgtctcagcctcccaagcatcagaattacaaggtatccccaccctcaccc 260
Query: 61 accccagcccttccctaatgctactggagcgtgtgcggtggtattcctctacaacctcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accccagcccttccctaatgctactggagcgtgtgcggtggtattcctctacaacctcca 320
Query: 121 ctatgacctctgtttccattatatctaaactttgtggcactgatggtccctaagccatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatgacctctgtttccattatatctaaactttgtggcactgatggtccctaagccatca 380
Query: 181 ccctaagaccaggcctccacctcctccaccccccacctccattccttcactccgtccttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctaagaccaggcctccacctcctccaccccccacctccattccttcactccgtccttc 440
Query: 241 cctcgtggacacaaatgtcctgtttggtagaagctggggcagaaggaggtgagattagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcgtggacacaaatgtcctgtttggtagaagctggggcagaaggaggtgagattagcc 500
Query: 301 ccagacgtctcctactttggcagaaaacccagggtacttcatgtctgaaaaaggagtgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagacgtctcctactttggcagaaaacccagggtacttcatgtctgaaaaaggagtgtg 560
Query: 361 tgtgtgtgtgtgtg----ctcgggagaggggggtctgaagcaggaggactggggatgggg 416
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 tgtgtgtgtgtgtgtgtgctcgggagaggggggtctgaagcaggaggactgggggtgggg 620
Query: 417 agccagtggaagaagagggg-caggagttagagatgcttgagaataagaggatgtgtttg 475
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 agccagtggaagaagagggggcaggagtcagagatgcttgagaataagaggatgtgtttg 680
Query: 476 ggggaccttaggcca 490
|||||||||||||||
Sbjct: 681 ggggaccttaggcca 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 895
Length adjustment: 10
Effective length of query: 480
Effective length of database: 885
Effective search space: 424800
Effective search space used: 424800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
