XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTAATA
ATACATTTAATGACAGGGAGTTGCATGAGATCATCAAGTATATGCTGTGT
AAACATATCGACCTGAGTTTGATTCAAAGAACTCAAAACAGCAACAACAA
CAAACATGGGCATGGTGGTATAGTATTATTACTCTAGACTTACAAATGTG
ATGAAAGACTTACATTGAGAGTCTTCCTAACAACACATCCTTGTCTACTG
AGTTCCAGACCCATGAACTGTCATGTATCAAAACCATAAAGCAGATAGAT
TCTGAGCAAAGACATGTGACATTGACCTTAGGATTCCAAGTACTATGGCA
CACTCTTGTTTATGTACCACCCATATATGTACAAATGTGTACATGGACCC
ATATGTATGTGAATGTATACTTACAATCTGCTTCATGTCATTAATAAACA
AGCAAGAATTTATAAAAATCTGGGGTAAAAAATTTAGGAAAAAAACTGGA
GAGGAATGTTATATGAGTGAATGTTTTCCAGTATGAAATTTTTATTCTGT
ATAAGTGAAGAGCAGACAGAAGTTAAAACAGAATATCTGAAAACCATATT
GGAGAGGGGGGTCCATACAATATGGCAGGTACATCAAAGGATGGAATGTG
TCATGACTCCTTGTATGATAGAGGTGACATTTTATAGGTATCTACTTTAA
GACTGTCCCCGACAAAATCTTGTTGAAGAAACTAATGTTTGCATGCACCT
GTGCTTCCAGCGTAATGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTCAGGAATACAGAATGGCAGAGAAGCACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCTGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGATACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACA
TTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGC
CCAAAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAACACAAGA
AACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGA
AGTGGGAACAAAACACCCTTGGA

Query= MSMg01no519_f19.b1 MSMg01no519_f19.b1 CHROMAT_FILE:
MSMg01no519_f19.b1 PHD_FILE: MSMg01no519_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:03 2005
         (667 letters)



>mm_chr1_111754912_111755980
          Length = 1069

 Score = 1247 bits (645), Expect = 0.0
 Identities = 660/665 (99%), Gaps = 2/665 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttt-aataatacatttaatgacagggagttgcatgagatcatcaagtatatgc 63
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttaaaaaatacatttaatgacagggagttgcatgagatcatcaagtatatgc 264

                                                                       
Query: 64  tgtgtaaacatatcgacctgagtttgattcaaagaactcaaaacagcaacaacaacaaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgtaaacatatcgacctgagtttgattcaaagaactcaaaacagcaacaacaacaaac 324

                                                                       
Query: 124 atgggcatggtggtatagtattattactctagacttacaaatgtgatgaaagacttacat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgggcatggtggtatagtattattactctagacttacaaatgtgatgaaagacttacat 384

                                                                       
Query: 184 tgagagtcttcctaacaacacatccttgtctactgagttccagacccatgaactgtcatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 tgagagtcttcctaacaacacatccttgtctactgagttccagacccatgaactgtcata 444

                                                                       
Query: 244 tatcaaaaccataaagcagatagattctgagcaaagacatgtgacattgaccttaggatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatcaaaaccataaagcagatagattctgagcaaagacatgtgacattgaccttaggatt 504

                                                                       
Query: 304 ccaagtactatggcacactcttgtttatgtaccacccatatatgtacaaatgtgtacatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaagtactatggcacactcttgtttatgtaccacccatatatgtacaaatgtgtacatg 564

                                                                       
Query: 364 gacccatatgtatgtgaatgtatacttacaatctgcttcatgtcattaataaacaagcaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacccatatgtatgtgaatgtatacttacaatctgcttcatgtcattaataaacaagcaa 624

                                                                       
Query: 424 gaatttataaaaatctggggtaaaaaatttaggaaaaaaactggagaggaatgttatatg 483
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 gaatttataaaaatctggggtaaaaaaattaggaaaaaaactggagaggaatgttatatg 684

                                                                       
Query: 484 agtgaatgttttccagtatgaaatt-tttattctgtataagtgaagagcagacagaagtt 542
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 685 agtgaatgttttccagtatgaaattctttattctgtataagtgaagagcagacagaagtt 744

                                                                       
Query: 543 aaaacagaatatctgaaaaccatattggagaggggggtccatacaatatggcaggtacat 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaaacagaatatctgaaaaccatattggagaggggggtccatacaatatggcaggtacat 804

                                                                       
Query: 603 caaaggatggaatgtgtcatgactccttgtatgatagaggtgacattttataggtatcta 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 caaaggatggaatgtgtcatgactccttgtatgatagaggtgacattttataggtatcta 864

                
Query: 663 cttta 667
           |||||
Sbjct: 865 cttta 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1069
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1059
Effective search space:   695763
Effective search space used:   695763
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)