BAC Information

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BAC

Clone NameMSMg01-519F20
Chromosome1 (Build37)
Map Location 194,233,238 - 194,465,567
singlet/doubletdoublet
Overlap geneKcnh1, Hhat
Upstream geneLOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
Downstream geneA730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519F20.T7 (MSMg01no519_f20.b1)MSMg01-519F20.TJ (MSMg01no519_f20.g1)
ACCAG590656AG590657
length773773
length of high quality
(start - end)		628 (34 - 661)592 (62 - 653)
definitionCHROMAT_FILE: MSMg01no519_f20.b1 PHD_FILE: MSMg01no519_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:03 2005CHROMAT_FILE: MSMg01no519_f20.g1 PHD_FILE: MSMg01no519_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(194,465,093 - 194,465,567)(194,233,238 - 194,233,699)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCCTTT
CTGTGCTGTGCTGTCCATTTGCTCTGGGGCTGGAGACCCCCAGAGAGGGA
ACCATCCCTTCTCATTCCAGCTGGAGATTTTCTATATCTGAATTAATAGC
AAGTTCATGTACCTGGTAATCAAGAGACTAGCAGCGATACCTGCCAAACA
GTTGCCCTACGAGAGGCCATTTAAGCTAGATGTTCACTGTGAAGTGGAAT
CTCTCAGCTTTGTCACTGCAGACATTTTGAACAGATTACCTCCTTTTGTG
AGAGGTTGTCTATGATGGTTAGCTTCAAGTGTCAACGGATACAGCCCAGA
GTCACCTGAGAAGAAGGTCCTTTAAAAAAGCACAATGTTTTCACTTTCTA
AGAATTTCATACTTGCACAAAATATATTTTGGTCATAGTCCTCTTCACTA
CTAATTCCTCCCAGGGGCACTCTGAGTTCATGAGTGCAGTGGTCTGTCCT
GTCCAAAGACACCATACTGCCTGAGTCCTGCCAGACTTCTGGGCCTTACA
ATCTCTCCCCTCGCTCTTCTGTAGTGATTCCTGAGTCTTGGTGGCAGGAT
GTGTTGTACAGGGTGTCCATTTGTCACTGAACACCCCATGGACATTTGTT
TTCTGCACTTAGAGTTTCTGTGTTAACCCCCATGCACCANGCCTGAAGTT
CATGTGTTGCCTTCTGTCGAGTGGTGTTTAAATTACAGCAGTTGGTAGCT
CCTATACATCTATGTTGCTGCTG

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTGTTCTGTGCCCTGCTCTAATACGTGTGGCACCTAAAG
GTCTCCATGTGTTTCTGATATGAATGACAGACAAGCATGCACACAAATAA
AAGAGGCAGAAAAGGCAAGCAGAGAGGAGGAAACTTCAGCACAGGTGTCC
CTGGCTTCCTCTGAAGGAGTGAGAGGAGGCATCGCATCTTCAAAAGAAAG
GTGCATCCAGAGAACAGAGTGTTGGGTGCACTGTTCCCATGGACATCAGC
CCCTGGGACCTTCCCAGTTCCCACTTATCCCATGCTTGTTTACAGCTAGG
GGGGTTTGTATCTTTAGTCATTTTCTGACCATGGGCTCCTTGCATTTCCC
TCCCATGCTTTCCTGTCCTAAGTTTGTCTCCTAAGCCTTGGACTGAAGGG
AGCCATTGTGGGGTTATCTGTGTAGAGGAAGAGAATCCACCAGCTAAAGG
AAGGTACTATCACCACATGGAGCAGCACAGGTGCACCTTCCCAGCATCTG
CTGAGGAAAATGCCGTGCCCAGCAGGTCACACACTCAGATTCCATTGATG
CTACATCTTAAAATGACAGTCATAGTAAAGAAGAGGGGGCATGGTTGTCA
GGGAAGGAGTGTGGCTAGACAGGGGTTGCATGAGAGAGCACCCTAGTGAC
AGAATGGTTCTGTATTCTGAACAGAGCACTGGCTACATGAATGTAACACA
GAACAATGGATGCATGTTCTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_f20.b1 MSMg01no519_f20.b1 CHROMAT_FILE:
MSMg01no519_f20.b1 PHD_FILE: MSMg01no519_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:03 2005
         (628 letters)



>mm_chr1_194465091_194466118
          Length = 1028

 Score =  849 bits (439), Expect = 0.0
 Identities = 466/475 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcctttctgtgctgtgctgtccatttgctctggggctggagacccccagagag 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattcttccttcctgtgctgtgctgtccatttgctctggggctggagacccccagagag 418

                                                                       
Query: 65  ggaaccatcccttctcattccagctggagattttctatatctgaattaatagcaagttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggaaccatcccttctcattccagctggagattttctatatctgaattaatagcaagttca 358

                                                                       
Query: 125 tgtacctggtaatcaagagactagcagcgatacctgccaaacagttgccctacgagaggc 184
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgtacctggtaattgagagactagcagcgatacctgccaaacagttgccctacgagaggc 298

                                                                       
Query: 185 catttaagctagatgttcactgtgaagtggaatctctcagctttgtcactgcagacattt 244
           ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 297 catttaaactagatgttcactgtgaagtggaatctctcagcttcgtcactgccgacattt 238

                                                                       
Query: 245 tgaacagattacctccttttgtgagaggttgtctatgatggttagcttcaagtgtcaacg 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||
Sbjct: 237 tgaacagattacctccttatgtgagaggttgtctatgatggttagcttcaagcatcaacg 178

                                                                       
Query: 305 gatacagcccagagtcacctgagaagaaggtcctttaaaaaagcacaatgttttcacttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gatacagcccagagtcacctgagaagaaggtcctttaaaaaagcacaatgttttcacttt 118

                                                                       
Query: 365 ctaagaatttcatacttgcacaaaatatattttggtcatagtcctcttcactactaattc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ctaagaatttcatacttgcacaaaatatattttggtcatagtcctcttcactactaattc 58

                                                                  
Query: 425 ctcccaggggcactctgagttcatgagtgcagtggtctgtcctgtccaaagacac 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  ctcccaggggcactctgagttcatgagtgcagtggtctgtcctgtccaaagacac 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no519_f20.g1 MSMg01no519_f20.g1 CHROMAT_FILE:
MSMg01no519_f20.g1 PHD_FILE: MSMg01no519_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:03 2005
         (592 letters)



>mm_chr1_194232908_194233899
          Length = 992

 Score =  832 bits (430), Expect = 0.0
 Identities = 454/462 (98%)
 Strand = Plus / Plus

                                                                       
Query: 131 caggtgtccctggcttcctctgaaggagtgagaggaggcatcgcatcttcaaaagaaagg 190
           ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caggtgtccctagcttcctctaaaggagtgagaggaggcatcgcatcttcaaaagaaagg 390

                                                                       
Query: 191 tgcatccagagaacagagtgttgggtgcactgttcccatggacatcagcccctgggacct 250
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cgcatccagagaacagagtgttgggtgcactgttcccatggacatcagcccctgggacct 450

                                                                       
Query: 251 tcccagttcccacttatcccatgcttgtttacagctaggggggtttgtatctttagtcat 310
           ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 451 tcccagttcccacttatcccatgcttgtttacagctaggcgggtttgtatctctagtcct 510

                                                                       
Query: 311 tttctgaccatgggctccttgcatttccctcccatgctttcctgtcctaagtttgtctcc 370
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tttctgaccataggctccttgcatttccctcccatgctttcctgtcctaagtttgtctcc 570

                                                                       
Query: 371 taagccttggactgaagggagccattgtggggttatctgtgtagaggaagagaatccacc 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 taagccttggactgaagggagccattgtggggttatctgtgtagaggaagagaatccacc 630

                                                                       
Query: 431 agctaaaggaaggtactatcaccacatggagcagcacaggtgcaccttcccagcatctgc 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agctaaaggaaggtactatcaccacatggagcagcacaggtgcaccttcccagcatctgc 690

                                                                       
Query: 491 tgaggaaaatgccgtgcccagcaggtcacacactcagattccattgatgctacatcttaa 550
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgagggaaatgccgtgcccagcaggtcacacactcagattccattgatgctacatcttaa 750

                                                     
Query: 551 aatgacagtcatagtaaagaagagggggcatggttgtcaggg 592
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aatgacagtcatagtaaagaagagggggcatggttgtcaggg 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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