CGGCCGCTATACGACTCCTATTCGGAGAGGATCCGCGGAATTCTCCTTTG
AGTTGTAACCTTTTTGTTTGATAGTGATGACTGTCTGTTTTGTCATTAAG
GGCAGAGAAAAGTACCAACTGTTCCAGAGGGCTGTCACTAATTTTGGCTG
AAATTCCACTCCTGATTTGATGTCAGTGAAGTCCTTAGTTGTAGCTTTGT
GATTAGTTAAAGGATATCTCCTTTAGTTGATCATAGTTTACTCTTTGTTG
TGTAATATATTTGGTGGTATGGGGNAGAGGGGGAGTTAAAACNTTCTATC
TGGCNNGAATCTCTTTAAGCANGAAAAGAAAAAAACTCAAAATAGTTTAA
GGAAGTCCCTGAAGCTAATTAAATTCATTAGGCTAATCCCTGCCAGAGTA
AACAGTAACAGCTGAGAGTCACTCTCAGAAGAGCAATGAGAAGCCTCAAA
GAAAACTCTCTTGTCAGACCAGCTGTCTGGAAGAAACAAAAACTAGCTAA
GCTGCTTGAAAGAGGTTTAGACAAACTAAAGAATGTGGAAAAGACCCTGT
CCAAACTCTTGAGCTGTCCATAGGCTGTACAATGTATGTTCCAGGTTTTC
CAGCTTCCACTCACAAGCTGTCACCCATGCCAGGGTAAACCTTGATGATT
TAGCTGGCTTTGAGGCATTTCTCCTCCTTCTAGAACCCTTTCCACCTGTT
TTGTAAGTACCCCCATAAAATCACGGGTTTCCCAGGGGGACTCCTGGGAA
TCCATACCTTGTGGCCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATANTGTTCACCTANTGGGTACNTTCATAATCA
TCTATCACAGAAGTNNAACTTCAGGCTCTGAAAAATGGGAGTGCATGGCC
AAAATGTATTTTTACTAAATAATCCCGGGGCCCCTTAAAAAACCTCCAAA
ATCCGGGGGAAAGGCAAATAGGGGCCTTTCCCCTTTTCCAAAAAAAACCT
TTTTTTTCCCCCCTTTTAAGAAAAACCCCCCCCCCCGGGAGGGGGCCCCC
CCCAGGGGAAAAATGTTTTTTCAAAAATTCTTTTTTTCCCAAAAAAAAAA
TCTTTTTTTGGGGGAAAAAAAGGGGGTTTTTTTTAAACCAAAAAGGGGGG
GGGTGGGAAAACACCCCCCCGAGGGGGGCCCCCCCCCCTTTTTTTTTTTT
TGGAAAAAAAAAAAAAAGGGGGGGGCGCCCCCCCCTCCCCTTTTTTTTTT
TGATAAATAACGCCCCCCCCTCCTCTTGTTTTTTTTTTTTCTTAACAAAA
AGAAAGAATATTTTCTTCCTCCTCCCTTCAAAAAAAAAAAAAAAAAACCC
NCCCCCCGGGTTGGTGTTGTTTGTTTGTGNNGNTCTTTTTTTTTTTCTCT
CCCCCAAAAAAAAAAAAAAATATTTT

Query= MSMg01no519_j16.b1 MSMg01no519_j16.b1 CHROMAT_FILE:
MSMg01no519_j16.b1 PHD_FILE: MSMg01no519_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:22 2005
         (583 letters)



>mm_chr1_117953268_117954249
          Length = 982

 Score =  814 bits (421), Expect = 0.0
 Identities = 450/461 (97%), Gaps = 1/461 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  ggaattctcctttgagttgtaacctttttgtttgatagtgatgactgtctgttttgtcat 72
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 460 ggaattctcctttgagttgtaacctttttgtttgatagtaatgactgtctgttttgtcat 401

                                                                       
Query: 73  taagggcagagaaaagtaccaactgttccagagggctgtcactaattttggctgaaattc 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 400 taagggcagagaaaagtaccaactgttccagagggctgtcactaattttggctgaaagtc 341

                                                                       
Query: 133 cactcctgatttgatgtcagtgaagtccttagttgtagctttgtgattagttaaaggata 192
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 340 cactcctgatttgatgtcagtgaagtctttagttgtagctttgtgattagttaaaggata 281

                                                                       
Query: 193 tctcctttagttgatcatagtttactctttgttgtgtaatatatttggtggtatggggna 252
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 280 tctcctttagttgatcatagtttactctttgttgtgtaatatatttggtggtatgggg-a 222

                                                                       
Query: 253 gagggggagttaaaacnttctatctggcnngaatctctttaagcangaaaagaaaaaaac 312
           |||||||||||||| | |||||||||||  ||| ||||||||||| ||||||||||||||
Sbjct: 221 gagggggagttaaagcattctatctggcaggaagctctttaagcaggaaaagaaaaaaac 162

                                                                       
Query: 313 tcaaaatagtttaaggaagtccctgaagctaattaaattcattaggctaatccctgccag 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tcaaaatagtttaaggaagtccctgaagctaattaaattcattaggctaatccctgccag 102

                                                                       
Query: 373 agtaaacagtaacagctgagagtcactctcagaagagcaatgagaagcctcaaagaaaac 432
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 101 agtaaacagtaacagctgagagtcactctcagaagagcaatgagaagccttaaagaaaac 42

                                                    
Query: 433 tctcttgtcagaccagctgtctggaagaaacaaaaactagc 473
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  tctcttgtcagaccagctgtctggaagaaacaaaaactagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 982
Length adjustment: 10
Effective length of query: 573
Effective length of database: 972
Effective search space:   556956
Effective search space used:   556956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)