BAC Information

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BAC

Clone NameMSMg01-519L21
Chromosome1 (Build37)
Map Location 173,007,206 - 173,007,728
singlet/doubletsinglet
Overlap genenone
Upstream geneDdr2, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3
Downstream gene1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519L21.T7 (MSMg01no519_l21.b1)MSMg01-519L21.TJ (MSMg01no519_l21.g1)
ACCAG590941AG590942
length748616
length of high quality
(start - end)		531 (36 - 566)---
definitionCHROMAT_FILE: MSMg01no519_l21.b1 PHD_FILE: MSMg01no519_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:33 2005CHROMAT_FILE: MSMg01no519_l21.g1 PHD_FILE: MSMg01no519_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:33 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGTA
TGCTCCTGACATCTAGAAGAAAGGTAACAGCGAAATCATTGTTTTTCACG
GTGTCTTGGGTAGACAACAGAAGGGAGATTTGTTCTCAGAAAGTCCTTTG
ACTTGGAAACAATCTTTGCAGAAAACCGAGATGGTCTTCTCTCATCTAAG
TGGTTGTTTTGGGGAAGAAGCCTTACAGCCTTGGAGCCAGTTCTGGGTCA
CAGGACAGTCTTGGTGCACCCAGAATGCCTTGCATGATTAAAGAAAGTAA
TCTGAGTAGTCACAAATGAGTGTCCAGTTCAAGCATCCGTAGTGATTTCT
TTCATTTAACACAGACACAGATTTACACACACACACACACACACACACAC
ACACACACACACTAATCTTTTATGTATACCCATATATATGAACATATAAC
CACACATGATATGTATACGTATGTATCTATATCTATCTATTAATACACAC
ACATACAGAAACACACACACACACACACACAAACACACATGGGCGCGCAC
TGATGACTGTACCCAGTAAGGACAAATGTTGCAGGGACCTGCTGTTTTCC
TTCATGAACTCTACACACAAAGCTAGGGATTTTGTGACCAGGAGGAAAGT
GCTTTATACCTCCCCTGCCCAGGGAAAAAAAAAAAACCTCCCCGGGTTTT
GGGGGGNTCCCCCCCCCAAAAAAAAAATAATTTCGTCTGGTTGGGGGG

TCCGCTTCAATTAGTACCTTANANGTCGCGAATCTCTGTAACAGCTAAAC
GGTTTGCAGAACATTGCCACTCNNCTAAAAAATTTTANGNCCAAAAGATC
GTTAAAACATTTTGAGGGCATTTTCCTTTTTTTTCCAAAAAAAAAAAAAA
TGTTCCAGTGGTACAAATAATGTAAGACTCGTTGCAATGTCAACCACCCC
CTGACGATATTGGAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTTTTTTTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_l21.b1 MSMg01no519_l21.b1 CHROMAT_FILE:
MSMg01no519_l21.b1 PHD_FILE: MSMg01no519_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:33 2005
         (531 letters)



>mm_chr1_173007206_173008136
          Length = 931

 Score =  886 bits (458), Expect = 0.0
 Identities = 505/526 (96%), Gaps = 12/526 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagtatgctcctgacatctagaagaaaggtaacagcgaaatcattgtttttca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggaattccagtatgctcctgacatctagaagaaaggtaacagcgaaatcattgtttttca 464

                                                                       
Query: 64  cggtgtcttgggtagacaacagaagggagatttgttctcagaaagtcctttgacttggaa 123
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 463 cggtgtcttgggtagacaacagaagggagatttgttctcagaaaggcctttgacttggaa 404

                                                                       
Query: 124 acaatctttgcagaaaaccgagatggtcttctctcatctaagtggttgttttggggaaga 183
           |||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 403 acaatctttgcagaaaactgagatggtcttctctcatctaagcggttcttttggggaaga 344

                                                                       
Query: 184 agccttacagccttggagccagttctgggtcacaggacagtcttggtgcacccagaatgc 243
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 343 agccttacagccttggagccagttctgggtcacaagacagtcttggtgcacccagaatgc 284

                                                                       
Query: 244 cttgcatgattaaagaaagtaatctgagtagtcacaaatgagtgtccagttcaagcatcc 303
           |||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 283 cttgcatgattaaagaaagtaatccgattagtcacaaatgagtgtccacttcaagcatcc 224

                                                                       
Query: 304 gtagtgatttctttcatttaacacagacacaga-----tttacac--acacacacacaca 356
           |||||||||||||||||||||||||||||||||        ||||  |||||||||||||
Sbjct: 223 gtagtgatttctttcatttaacacagacacagacacag---acacagacacacacacaca 167

                                                                       
Query: 357 cacacacacacacacacacac--taatcttttatgtatacccatatatatgaacatataa 414
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 166 cacacacacacacacacacacattaatcttttatgtatacccatatatatgaacatataa 107

                                                                       
Query: 415 ccacacatgatatgtatacgtatgtatctatatctatctattaatacacacacatacaga 474
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 106 ccacacatgatatgtatacgtatgtatctatatctatctattaatacacatacatacaga 47

                                                         
Query: 475 aacacacacacacacacacacaaacacacatgggcgcgcactgatg 520
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  aacacacacacacacacacacaaacacacatgggcgcgcactgatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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