Query= MSMg01no520_c11.b1 MSMg01no520_c11.b1 CHROMAT_FILE:
MSMg01no520_c11.b1 PHD_FILE: MSMg01no520_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:06 2005
(654 letters)
>mm_chr1_137862611_137863671
Length = 1061
Score = 1168 bits (604), Expect = 0.0
Identities = 642/658 (97%), Gaps = 9/658 (1%)
Strand = Plus / Plus
Query: 5 gaattctggggagtctctatggtcctgcccacagggctcagtaagacgcaatgcccgacc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattctggggagcctctatggtcctgcccacagggctcagtaagacgcaatgcccggct 264
Query: 65 tctcatttccctaggctggcacagagatcagggtgtaagggagata-aaagaaccccccc 123
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 tctcatttccctaggctggcacagagatcagggtgtaagggagatataaagaacccccc- 323
Query: 124 acatataccccc-gagtcccacagagaggcatttggagtcacagaggcaagctaatactc 182
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acatataccccccgagtcccacagagaggcatttggagtcacagaggcaagctaatactc 383
Query: 183 tgggaccttggacatggagtttcaagagttaacaccaagcagacctttgagtttcacata 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgggaccttggacatggagtttcaagagttaacaccaagcagacctttgagtttcacata 443
Query: 243 gcttggatcccttctgcacggggagaggaaaggagc------ggaggctccttgaatttg 296
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 444 gcttggatcccttctgcacggggagaggaaaggagcaggagcggaggctccttgaatttg 503
Query: 297 caagggattctgggaaatagagacaccggtagtgatgagttcctgtgccgaaggtagaac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caagggattctgggaaatagagacaccggtagtgatgagttcctgtgccgaaggtagaac 563
Query: 357 tggcaagtaggcacccctgtgtccaaggactctaccctctggctccaccctataagagcc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggcaagtaggcacccctgtgtccaaggactctaccctctggctccaccctataagagcc 623
Query: 417 accagctgggagtacctacctcgggcctctgaagaagagcggccagtgccaggctggtat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 accagctgggagtacctacctcgggcctctgaagaagagcggccagtgccaggctggtat 683
Query: 477 ctggatctggggctctgggtagcatcttgtgcctggccacagacatctgacctgccctct 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctggatctggggctctgggtagcatcttgtgcctggccacagacatctgacctgccctct 743
Query: 537 tgggtatctctcctgttgccaagatgcctgtgggggcctcgcctcctgtcttcactccaa 596
||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 744 tgggtatctctcctgctgccaaggtgcctgtgggggccttgcctcctgtcttcactccaa 803
Query: 597 ggttctctcagagaccctctatcctcactgccagcccaaggctccagccctcgggccc 654
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 804 ggttctctcagagaccctctatcctcactgccagcccaaggctccagccctccggccc 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1061
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1051
Effective search space: 676844
Effective search space used: 676844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_c11.g1 MSMg01no520_c11.g1 CHROMAT_FILE:
MSMg01no520_c11.g1 PHD_FILE: MSMg01no520_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:07 2005
(679 letters)
>mm_chr1_138022879_138023957
Length = 1079
Score = 1207 bits (624), Expect = 0.0
Identities = 637/642 (99%), Gaps = 2/642 (0%)
Strand = Plus / Minus
Query: 1 cacccagtgcttgcctcaaagtagatttcagtccttcacattgtttgcgggttctccatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cacccagtgcttgcctcaaagtagatttcagtccttcacattgtttgcgggttctccatc 583
Query: 61 ttttctccaatagactccacctctgtctggctagaggggtaggtttacaaaaaaagatgg 120
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 582 ttttctccaatagactctacctctgtctggccagaggggtaggtttacaaaaaaagatgg 523
Query: 121 agagggactctcaggagtgagcaagaacaaggttgtgaagatgaggtgtcattagtgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agagggactctcaggagtgagcaagaacaaggttgtgaagatgaggtgtcattagtgagg 463
Query: 181 ggtcggggtggaattcagtggtagaaggcttgccctgcatgagtggaattctaggttcgt 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggccggggtggaattcagtggtagaaggcttgccctgcatgagtggaattctaggttcgt 403
Query: 241 cagctaagcctttggcgtgagatctgctgggtggatcggcagatctgcaggaacttagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cagctaagcctttggcgtgagatctgctgggtggatcggcagatctgcaggaacttagct 343
Query: 301 gccctctgctgatgacatggcagcaccttgggctttccaggaggaggccttagccttgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gccctctgctgatgacatggcagcaccttgggctttccaggaggaggccttagccttgtg 283
Query: 361 caccctttcctacacaggtaaccatggcctgcctccctgggggctgggcccctgaaaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 caccctttcctacacaggtaaccatggcctgcctccctgggggctgggcccctgaaaggg 223
Query: 421 gagagttctcactcaccctgtaaccacgctggatgtgtcacacacgttttcacctaaccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gagagttctcactcaccctgtaaccacgctggatgtgtcacacacgttttcacctaaccc 163
Query: 481 tcacaatcatctctggggtacaccattatcgtgactgtttttcaaaagaggaaacaggtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tcacaatcatctctggggtacaccattatcgtgactgtttttcaaaagaggaaacaggtt 103
Query: 541 caaaggtcacttggctagggtagtagtcatta--gtgctgttcctgtatttcccgaactc 598
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 102 caaaggtcacttggctagggtagtagtcattagtgtgctgttcctgtatttcccgaactc 43
Query: 599 tgcctttccagcacagggctcaggactacatgtccttactcc 640
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 tgcctttccagcacagggctcaggactacatgtccttactcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
