NCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTAAGGTGAATGATTCTTGCTTACTTCACTGTTCTAGAAGAG
ATTACTATATTCCAACAAATCAGGAGATGATTTCTTAAAAGATGACATTA
AAGGACAGAAGGATGAGGAGATGAGCTGCTTGTATTTGGGCAAGGGGAAG
GGGTCACAGAGATCAGGATGTAAAGTGAATAAATAAATTAATGGGGAAAA
GGCAATATGTAGAAATAAAAAATAAAAGAAAAAGAAAAACTTATAGAAGA
TAAAAAATATATATATAAAAGGTCAGATGTTCCTCCAATGCCAGCAAATC
AACTAAGGAATCTAAATTGCCCAGTCCCCTTGAAGGTAAAAGAATACCAA
TAGGAGATGCCTGGCTAGATATAATCATTTGGCTTGCAATATAAATATCA
TGCTTAGATATGAAATAAAGGTTAATTAATGCTTAGATAATGGGGTAAAG
GTCAATTAGTGATGATAATGGAATGGGGAAGAGGAAAAGAAGCCAAATGA
GTAAATGGTAAGGATTCTGGGAAAACGGCTAAGGAGAAATGAATTAAAAT
GTTATGCTTGACTATTTTGGAATTTATATGAATAAAGATGGCTTTAGCTA
TTCGGGGCCATCTGTTTGAAAGACAAACAATGGTGAAACTCTTCATTTTT
GCTACCTCTACACATTGGTCTTACACCCAAAACAGTGCTGGAGCTGGAAT
CNNTACATAAAAGCACCCAATAGTTAAG

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCATGACATGTAGTTCTCAGGAT
CTTACCTCAAACAAAGTGCACCCACTTTGATCGGGCTAACCTTTGGGCTG
CATTCCTTGAGTTCTAAAAGCATTTGTCCCTCCCACGTGGCCCTCTGTAC
TCTCCAGCCTTATGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGNNNNNNNNNNTGTNNNNNTGTNTTTTTTNTNN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTNTTNNNNNNTNNNNTTNNTTTTTTTTTTTNTTNTTT
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTNNTTTTTTTTTTTTTTTTTNN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTNTTTT
NTTTTTTTTTTTTTATATTTTTTTTTTTTTTTTTTTTTTTTNTAATTTTT
TTTTTTTTATAATTAATTTTAATTTTTTAATTTTATTATATTATTTATAT
AAATTTTATATTAAAATAAAATTATTATTATATATTATTATTATTAAAAA
ATATATATAATTTAAATATCTTTATTTCTNAATTTAATTATTATATTTTT
TATTTTACTTTTTTATTATAATTATACTCATTTGGTAACTTGTTTAAGTA
TATCATT

Query= MSMg01no520_d11.b1 MSMg01no520_d11.b1 CHROMAT_FILE:
MSMg01no520_d11.b1 PHD_FILE: MSMg01no520_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:12 2005
         (624 letters)



>mm_chr1_149878538_149879561
          Length = 1024

 Score = 1093 bits (565), Expect = 0.0
 Identities = 607/621 (97%), Gaps = 4/621 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactaaggtgaatgattcttgcttacttcactgttctagaagagattactatatt 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcactaaggtgaatgattcttgcttacttcactgttctataagagattactatatt 264

                                                                       
Query: 65  ccaacaaatcaggagatgatttcttaaaagatgacattaaaggacagaaggatgaggaga 124
           |||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 265 ccaacaaatcaggagatggtttcttaaaagatgacattaaaagacaggaggatgaggaga 324

                                                                       
Query: 125 tgagctgcttgtatttgggcaaggggaaggggtcacagagatcaggatgtaaagtgaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagctgcttgtatttgggcaaggggaaggggtcacagagatcaggatgtaaagtgaata 384

                                                                       
Query: 185 aataaattaatggggaaaaggcaatatgtagaaataaaaaataaaagaaaaagaaaaact 244
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 aataaattaatggggaaaaggcaatatgtagaaat-aaaaataaaagaaaaagaaaaact 443

                                                                       
Query: 245 tatagaagataaaaaatatatatataaaaggtcagatgttcctccaatgccagcaaatca 304
           |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 444 tatagaagataaaaaa-atatatataaaaggtcagacgttcctccaatgccagaaaatca 502

                                                                       
Query: 305 actaaggaatctaaat-tgcccagtccccttgaaggtaaaagaataccaataggagatgc 363
           |||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 503 actaaggaatctaaatct-cccaatccccttgaaggtaaaagaataccaataggagatgc 561

                                                                       
Query: 364 ctggctagatataatcatttggcttgcaatataaatatcatgcttagatatgaaataaag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctggctagatataatcatttggcttgcaatataaatatcatgcttagatatgaaataaag 621

                                                                       
Query: 424 gttaattaatgcttagataatggggtaaaggtcaattagtgatgataatggaatggggaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gttaattaatgcttagataatggggtaaaggtcaattagtgatgataatggaatggggaa 681

                                                                       
Query: 484 gaggaaaagaagccaaatgagtaaatggtaaggattctgggaaaacggctaaggagaaat 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 682 gaggaaaagaagccaaatgagtaaatggtaaggattctgggaaaacggctaaagagaaat 741

                                                                       
Query: 544 gaattaaaatgttatgcttgactattttggaatttatatgaataaagatggctttagcta 603
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaattaaaatgttatgcttgaatattttggaatttatatgaataaagatggctttagcta 801

                                
Query: 604 ttcggggccatctgtttgaaa 624
           || ||||||||||||||||||
Sbjct: 802 ttaggggccatctgtttgaaa 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)