TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATAACACTGTCTATACCCGCTCACAGTCAGAATTCTATAACACTG
TCTATACCTGCTCACAGTCAGAATTCTATAACACTGTCTATACCCGCTCA
GAGTCAAACATTACTATTCTCATCATCTTCTTTTATTGAGGCAGTCACAA
AGATCCAAACAACTGTTATTGTATGGGTGCATGCTATGACTTGAATCTGC
TCCAAATTCATGTGTCAGAGCTTTATCCCCAAATTCATGCTAATAGTATT
TCAGAGTGGAGCTTTTGGGGCTAATTGAGATTAAATAAAGACATGAGAAT
AGGCTCCCATGAGTGGTTTAATAAAAAGTAGAAGAAAGACCCCAGTTCTA
TGCTTGCTCTGACTTTCCACATGACTCCCTGCACAACGGTGGGATATAGC
CTGAGGTCCTGACTAGATGGCAGACAGATCTTATAACTATGCCCTTTGAG
TCCCCAGCACCCTGAATGGTAATTCAAATAAACTCTTTTGTGAACTATCT
GGTGTTTGGATATTTTGTTTCAGCTAAATGGAATTAACTAAAAGAATGTG
TTAAAGCATTTGCACTTTTAAAGCAATCACAGTCTGTAGGTTTAATATTT
CCAAGACACACACATGCACACACACACACACACACACACACATACTCACT
CACATACACACACATCTCTCACCAAATGTTAATTGGGAAAAAAAAAACCT
TTACTACTCTAAATT

ATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTCCTTCTGTCATAGTGGATGAGGGATTG
AACATAGACCATCAAGTTTATCATCAAGTGCCTTTACCCTCTAAGCCATC
TTGCTACTACAGGAGTGTATTTCTTTTTCTCTTGCTATTTAAAAATAATT
TTATACAATATATATTTGATCATATTCTTTCCCTTCCCCCAACTTTTTCC
AGATTCTCCTCACTTTCCTACTTGTCCAAATTTATTCTCTCTCTCTTTCT
TACTCTCTCTCTCCCTCCTTCCTTCCCTCCTTCTCTCTTCCTCTCTGTCT
TTCTCTCCCCTTTTCTCCTCGTCTCTCTGAAAAAATTAAAACAAAAACAA
ACAAGTAAAAACTAATAAGCTTAAAAAATACCCAAAACAGAAACCACACA
CACACAAAGAAATCATGGAGTCAGCTTCTTGCAGGCCAGTAAGCCCCATT
CATGGGACTACCCTGCAGTGTGGTGAATATACCCAGTGTCACTCCATTGG
AGAAAAATGGTTTTTGTCTCCCAGCAAGTATCCATTGCAAATAGATTATT
TTCTTAATTAGATTTTTTTATTTTAATGTTATGTACATTGGTGCTTGCCT
GTATGTCTGTCTGTGTGAGGGTGTTGGAATACCTGGAACTGGAGTCACAG
ACAGTTGTGAGCTACCACGTGGGTGCCAGGAATTCAACCAGGTCGTCTGG
GAGAGCN

Query= MSMg01no520_g01.b1 MSMg01no520_g01.b1 CHROMAT_FILE:
MSMg01no520_g01.b1 PHD_FILE: MSMg01no520_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:24 2005
         (648 letters)



>mm_chr1_43041243_43042290
          Length = 1048

 Score = 1023 bits (529), Expect = 0.0
 Identities = 558/573 (97%), Gaps = 12/573 (2%)
 Strand = Plus / Minus

                                                                        
Query: 87   acactgtctatacccgctcagagtcaaacattactattctcatcatcttcttttattgag 146
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1048 acactgtctatacccgctcagagtcaaacattactattcccatcatcttcttttattgag 989

                                                                        
Query: 147  gcagtcacaaagatccaaacaactgttattgtatgggtgcatgctatgacttgaatc--t 204
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 988  gcagccacaaagatccaaacaactgttattgtatgggtgcatgctatgacttgaatctgt 929

                                                                        
Query: 205  gctccaaattcatgtgtcagagctttatccccaaattcatgctaatagtatttcagagtg 264
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 928  gctccaaattcatgtgtcagagctttatccccaaattcatgctaagagtatttcagagtg 869

                                                                        
Query: 265  gagcttttggggctaattgagattaaataaagacatgagaataggctcc--------cat 316
            |||||||||||||||||||||||||||||||||||||||||||||||||        |||
Sbjct: 868  gagcttttggggctaattgagattaaataaagacatgagaataggctcccatgatggcat 809

                                                                        
Query: 317  gagtggtttaataaaaagtagaagaaagaccccagttctatgcttgctctgactttccac 376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  gagtggtttaataaaaagtagaagaaagaccccagttctatgcttgctctgactttccac 749

                                                                        
Query: 377  atgac-tccctgcacaacggtgggatatagcctgaggtcctgactagatggcagacagat 435
            ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748  atgacat-cctgcacaacggtgggatatagcctgaggtcctgactagatggcagacagat 690

                                                                        
Query: 436  cttataactatgccctttgagtccccagcaccctgaatggtaattcaaataaactctttt 495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689  cttataactatgccctttgagtccccagcaccctgaatggtaattcaaataaactctttt 630

                                                                        
Query: 496  gtgaactatctggtgtttggatattttgtttcagctaaatggaattaactaaaagaatgt 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629  gtgaactatctggtgtttggatattttgtttcagctaaatggaattaactaaaagaatgt 570

                                                                        
Query: 556  gttaaagcatttgcacttttaaagcaatcacagtctgtaggtttaatatttccaagacac 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569  gttaaagcatttgcacttttaaagcaatcacagtctgtaggtttaatatttccaagacac 510

                                             
Query: 616  acacatgcacacacacacacacacacacacaca 648
            |||||||||||||||||||||||||||||||||
Sbjct: 509  acacatgcacacacacacacacacacacacaca 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)