NAAAACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAACTGAGTGACACTGAATGGCTGAGAAGCACCTAAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCTAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTG
GTGGGACTGCAAGCTGGTACAACCACTGGGGGTGGGGGGGGGAAGAAAAT
TGAAAAAAACAAAACAAAACAAAACCAAAGATGTATTTGCATGAGAATAG
TTCTTGGTAGGGCTTTGGTAGAAGATCATAAGCAGAGGAAGCAACATTCC
AGCTGGTCCTTTCAGACCAGAACAGACCAGCAGAATCATGGCTTCTGTTG
TAGATACCTCTGGTGACAGAAGTCAGGCATGAAGGGAGGCAGTCATAGAT
TAAATAGCCGGCTGGTGAGGATGGTCTTCTGGGGGGCACACACCCATCAC
TGCTATAGCTGCATGCCTCCCCCTTGGCTATCATAAGCTGTGTATGTAGG
TGCAGCAAGTTCCTTGCTCAGTATTTAGACAGCACAGTTGGTACCATACT
GACCTCACATCCTAGCCAGACATGTCTATCCAGCCCATCCACTCACAGCA
GCCCCTGATTAGGGGAAGTGCTGCCCCTGGATTTAAGATGGGCTTCAGGC
AGTCTACAACTTT

AAACCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCTGAAAAACAAATACTTCCCAGGCATTTGGAGG
CACTGCTCCATTGTCTCCTTGCTTCAAGGTTACTGGGGGTGGGGTGGGTG
GGTGGGTGGAGGANAGGGCCAAGNATGGATTCTGATCAAAGATCTTTTGT
ACAAACCCTGACAGCATTATCTCTTGTTGCCGTGGCAAGGTACTTGAGAA
AAGCAATTTTAAAATAGAAATCAAAAAAGCCCATGAAGTGACATGAACTG
GCTCACGACCCCCAAGACCAATTTTTTTTTTTTCATAAAGGAGATTTATT
TTCCACAAATGGATATATTTCAGGTAATAAAAATCAAAGGCAGGATATAC
AGAACACAATATAGAAGATGTTCGCCAACAAAATAGATACGCTAAAGAGA
ATTTGGATGCTGCAACAAAGAGCTGCCCCATGATATAGAGGATACACATG
TACCCCATAAAAAAAATTGTAGATAATAAAAGTATAAATACAATTCACAT
GTTATGATAAAGGTATTAAAATCATGTGAGTATGATAGATTATTGTGATA
TGAAAAGTATTCATTTTGTATAATTTCACTATTAACAAATTTTCTAAAAC
TCAAGTTACATGTTTAAATCCTTCTTCCACAGAAGTATAATTAGTTACTA
TCACCTTACATAACCATTGACAGTTTAAAACTTATTAATAATATTAATTG
ATTATTCAATAATCCTCTTTTAATATACACATAAATATGTATAACCCAAA
ATTCC

Query= MSMg01no520_h24.b1 MSMg01no520_h24.b1 CHROMAT_FILE:
MSMg01no520_h24.b1 PHD_FILE: MSMg01no520_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:34 2005
         (661 letters)



>mm_chr1_92568742_92569803
          Length = 1062

 Score = 1143 bits (591), Expect = 0.0
 Identities = 641/659 (97%), Gaps = 7/659 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaactgagtg-acactgaatggctgagaagcacctaaaaaaatgttcaacatc 63
           ||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 209 gaattctcaactgag-gaatactgaatggctgagaagcacctataaaaatgttcaacatc 267

                                                                       
Query: 64  cttaatcatcagggaaatgctaatcaaaacaaccctgagattccacctcacaccagtcag 123
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cttaatcatcagggaaatgct-atcaaaacaaccctgagattccacctcacaccagtcag 326

                                                                       
Query: 124 aatggctaagatcaaaaactcaggtgacagcagatgctggcgaggatgtggagaaagagg 183
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aatggctaagataaaaaactcaggtgacagcagatgctggcgaggatgtggagaaagagg 386

                                                                       
Query: 184 aacactcctccattgctggtgggactgcaagctggtacaaccactgggggtggggggggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 387 aacactcctccattgctggtgggactgcaagctggtacaaccactggg---ggggggggg 443

                                                                       
Query: 244 aagaaaattgaaaaaaacaaaacaaaacaaaaccaaagatgtatttgcatgagaatagtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagaaaattgaaaaaaacaaaacaaaacaaaaccaaagatgtatttgcatgagaatagtt 503

                                                                       
Query: 304 cttggtagggctttggtagaagatcataagcagaggaagcaacattccagctggtccttt 363
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttggtagggctttggtagaagaacataagcagaggaagcaacattccagctggtccttt 563

                                                                       
Query: 364 cagaccagaacagaccagcagaatcatggcttctgttgtagatacctctggtgacagaag 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 564 cagaccagaacagaccagcagaatcatggcttctgttgtagatacctctggtgacaaaag 623

                                                                       
Query: 424 tcaggcatga-agggaggcagtcatagattaaatagccggctggtgaggatggtcttctg 482
           ||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 tcaggcatgagggggaggcagtcatagattaaatagcctgctggtgaggatggtcttctg 683

                                                                       
Query: 483 gggggcacacacccatcactgctatagctgcatgcctcccccttggctatcataagctgt 542
           ||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||
Sbjct: 684 gggggcacacacccatcactgctctagctgcatgcctcccccagggctatcataagctgt 743

                                                                       
Query: 543 gtatgtaggtgcagcaagttccttgctcagtatttagacagcacagttggtaccatactg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtatgtaggtgcagcaagttccttgctcagtatttagacagcacagttggtaccatactg 803

                                                                      
Query: 603 acctcacatcctagccagacatgtctatccagcccatccactcacagcagcccctgatt 661
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 804 acctcacatcctagccagacatgtctatccagcccctccactcacagcagcccctgatt 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1062
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1052
Effective search space:   684852
Effective search space used:   684852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)