BAC Information

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BAC

Clone NameMSMg01-520I22
Chromosome1 (Build37)
Map Location 193,204,018 - 193,373,274
singlet/doubletdoublet
Overlap genePpp2r5a, LOC100039501, LOC667044, Dtl
Upstream geneLOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik
Downstream geneInts7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1, Hhat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520I22.T7 (MSMg01no520_i22.b1)MSMg01-520I22.TJ (MSMg01no520_i22.g1)
ACCAG591561AG591562
length736742
length of high quality
(start - end)		681 (54 - 734)660 (83 - 742)
definitionCHROMAT_FILE: MSMg01no520_i22.b1 PHD_FILE: MSMg01no520_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:38 2005CHROMAT_FILE: MSMg01no520_i22.g1 PHD_FILE: MSMg01no520_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(193,372,597 - 193,373,274)(193,204,018 - 193,204,677)
sequence
NTTAATATACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTGGCTGATACCATCCTTTAATGTCCTTTATAAGGAG
TATTTTTTTCTGTGAAAGAATGACTTATAGTCTATAGCATTGTAGGAATG
ATCTATGTATCTGTTAATACATTTAACTTTTAATTTAACAAGGCAAATTA
GAGTATATTCTTTGTGTGGTTTTAATCATTGTGCATTTGCCTCATAGCAG
AGACAAGAGTGGTAATGATTGCGTTGGATAACCTTATAGACCAGTGTCGG
TTATCTTAGCTGTAATCTGAAGACTCTGTTAAGCTGACTTAGTCATTGTC
ACAAGTATTCTTTCCAAAGTTGCCTCCTTCATGCAAATGACCCATGATTC
AGAGCCTCAGGAAAATAGAGAATGTGTTCACCGTGCACCTTGCTTTTCAA
ATACATCTACTAATAACAGAGTAAGCTTGTACTCTATTATGCTGGGGTTC
CTGTGTGCTTTAAAATATATTGATAACTTTGGAAAGAATTGACTGTACAA
TGCTATCAAGTACCTATCACTGAAAGTATCCAATAATAAGAAAAAGTTTG
AATGAAAAAATATAAATTGTAGCTCATGTCCCTTCCTTCAGATTGGACGT
TCATCCAAATGAAAGGATGATGCTTGGGGTTTTGGTCATAGTCGGTGTGT
CTTGCTTTAAGCAGAAAAATAAACCTCTCTTCTTAN

NAAAATTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTAAAAAAACCAGAGG
CTCTCTCTACTTCAATCTTCCTGACAGCCTTCCTCAGGTACTAACAGACA
CTGGTACTTCTATCACCAAGTTAGGTAGAGAGGTGAGAGTTCCCTTCTTA
CTCTACTCATACCACAGAGACTGTACTTTTGGGCAGCACCACTAAGAATA
TGACCCCAATCACCCTACCCCTGGCATTGTATGCAAGATAAAAAGACCTT
AGGCTACTACCTACAGGTTACCCTTGCATAAAGCTAGCTCTTCTTTCCCA
AAGAAATCTTTAGTTTACAAGTACTCTCAGAAACAGCAGGGGCTATGATG
GAAGGGGATGATAGAGAATTCTAGATTCACCAAGAACTCATAAGCCAACT
TACTGTCAGAAGAGACCTGTAAAAGGGAAGAGCTTTTAGTATGTAGAGGA
GTCTTTTGGTATGAGAGTCATGTCCACCCCCTTCCTACTTCCATCCCTAC
CCCTCTGTCTGGAAAAGTACAGCCCATGGGTTAACAAGAAGGGGGAAAAG
GGCACAGCATACTTAATTGCTTCTGAGAGTTCACACTAGACCTAACAGAT
TATGATTACCAAGAAACCATTACTCAAAGGGAGCCATGATTAAAGAAAGA
TGTCATGACAATGTCTCGTTAAATGGAGTCAGAAAAGTATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_i22.b1 MSMg01no520_i22.b1 CHROMAT_FILE:
MSMg01no520_i22.b1 PHD_FILE: MSMg01no520_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:38 2005
         (681 letters)



>mm_chr1_193372393_193373474
          Length = 1082

 Score = 1280 bits (662), Expect = 0.0
 Identities = 674/678 (99%), Gaps = 1/678 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggctgataccatcctttaatgtcctttataaggagtatttttttctgtgaaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 gaattcctggctgaaaccatcctttaatgtcctttataaggagtatttttttctgtgaaa 823

                                                                       
Query: 65  gaatgacttatagtctatagcattgtaggaatgatctatgtatctgttaatacatttaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gaatgacttatagtctatagcattgtaggaatgatctatgtatctgttaatacatttaac 763

                                                                       
Query: 125 ttttaatttaacaaggcaaattagagtatattctttgtgtggttttaatcattgtgcatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ttttaatttaacaaggcaaattagagtatattctttgtgtggttttaatcattgtgcatt 703

                                                                       
Query: 185 tgcctcatagcagagacaagagtggtaatgattgcgttggataaccttatagaccagtgt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 702 tgcctcatagcagagacaagagtggtaatgattgcgttggataaccttatagaccagtat 643

                                                                       
Query: 245 cggttatcttagctgtaatctgaagactctgttaagctgacttagtcattgtcacaagta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cggttatcttagctgtaatctgaagactctgttaagctgacttagtcattgtcacaagta 583

                                                                       
Query: 305 ttctttccaaagttgcctccttcatgcaaatgacccatgattcagagcctcaggaaaata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttctttccaaagttgcctccttcatgcaaatgacccatgattcagagcctcaggaaaata 523

                                                                       
Query: 365 gagaatgtgttcaccgtgcaccttgcttttcaaatacatctactaataacagagtaagct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gagaatgtgttcaccgtgcaccttgcttttcaaatacatctactaataacagagtaagct 463

                                                                       
Query: 425 tgtactctattatgctggggttcctgtgtgctttaaaatatattgataactttggaaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgtactctattatgctggggttcctgtgtgctttaaaatatattgataactttggaaaga 403

                                                                       
Query: 485 attgactgtacaatgctatcaagtacctatcactgaaagtatccaataataagaaaaagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 attgactgtacaatgctatcaagtacctatcactgaaagtatccaataataagaaaaagt 343

                                                                       
Query: 545 ttgaatgaaaaaatataaattgtagctcatgtcccttccttcagattggacgttcatcca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttgaatgaaaaaatataaattgtagctcatgtcccttccttcagattggacgttcatcca 283

                                                                       
Query: 605 aatgaaaggatgatgcttggggttttggtcatagtcggtgtgtcttgctttaagcagaaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aatgaaaggatgatgcttggggttttggtcatagtcggtgtgtcttgctttaagcagaaa 223

                             
Query: 665 aat-aaacctctcttctt 681
           ||| |||||| |||||||
Sbjct: 222 aattaaacctttcttctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1082
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1072
Effective search space:   719312
Effective search space used:   719312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no520_i22.g1 MSMg01no520_i22.g1 CHROMAT_FILE:
MSMg01no520_i22.g1 PHD_FILE: MSMg01no520_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:38 2005
         (660 letters)



>mm_chr1_193203818_193204877
          Length = 1060

 Score = 1245 bits (644), Expect = 0.0
 Identities = 656/660 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattaaaaaaaccagaggctctctctacttcaatcttcctgacagccttcctcaggtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattaaaaaaaccagaggctctctctacttcaatcttcctgacagccttcctcaggtact 260

                                                                       
Query: 61  aacagacactggtacttctatcaccaagttaggtagagaggtgagagttcccttcttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagacactggtacttctatcaccaagttaggtagagaggtgagagttcccttcttact 320

                                                                       
Query: 121 ctactcataccacagagactgtacttttgggcagcaccactaagaatatgaccccaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctactcataccacagagactgtacttttgggcagcaccactaagaatatgaccccaatca 380

                                                                       
Query: 181 ccctacccctggcattgtatgcaagataaaaagaccttaggctactacctacaggttacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctacccctggcattgtatgcaagataaaaagaccttaggctactacctacaggttacc 440

                                                                       
Query: 241 cttgcataaagctagctcttctttcccaaagaaatctttagtttacaagtactctcagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgcataaagctagctcttctttcccaaagaaatctttagtttacaagtactctcagaa 500

                                                                       
Query: 301 acagcaggggctatgatggaaggggatgatagagaattctagattcaccaagaactcata 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 acagcaggggctatgatggaagggaatgatagagaattctagattcaccaagaactcata 560

                                                                       
Query: 361 agccaacttactgtcagaagagacctgtaaaagggaagagcttttagtatgtagaggagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccaacttactgtcagaagagacctgtaaaagggaagagcttttagtatgtagaggagt 620

                                                                       
Query: 421 cttttggtatgagagtcatgtccacccccttcctacttccatccctacccctctgtctgg 480
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 cttttggtatgagagtcatgtccacacccttcctacttccatccctacccctctgtctgg 680

                                                                       
Query: 481 aaaagtacagcccatgggttaacaagaagggggaaaagggcacagcatacttaattgctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaagtacagcccatgggttaacaagaagggggaaaagggcacagcatacttaattgctt 740

                                                                       
Query: 541 ctgagagttcacactagacctaacagattatgattaccaagaaaccattactcaaaggga 600
           |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 741 ctgagagttcacactagatctaacagattatgattgccaagaaaccattactcaaaggga 800

                                                                       
Query: 601 gccatgattaaagaaagatgtcatgacaatgtctcgttaaatggagtcagaaaagtatga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gccatgattaaagaaagatgtcatgacaatgtctcgttaaatggagtcagaaaagtatga 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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