BAC Information

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BAC

Clone NameMSMg01-520J22
Chromosome1 (Build37)2 (Build37)
Map Location 157,885,182 - 157,885,774163,467,478 - 163,467,952
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1
Downstream geneIfrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520J22.T7 (MSMg01no520_j22.b1)MSMg01-520J22.TJ (MSMg01no520_j22.g1)
ACCAG591609AG591610
length751759
length of high quality
(start - end)		591 (54 - 644)491 (84 - 574)
definitionCHROMAT_FILE: MSMg01no520_j22.b1 PHD_FILE: MSMg01no520_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:43 2005CHROMAT_FILE: MSMg01no520_j22.g1 PHD_FILE: MSMg01no520_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:43 2005
singlet/doubletsingletsinglet
BLAST hituniqueplural
Map location.(157,885,182 - 157,885,774)(163,467,478 - 163,467,952)
sequence
NNNNNNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGATTACTATGAGTTAAAGCCAAATTCTTGTCAAACCAGATATT
CTGCTGTAGGTGTTTTCCAACCTCTTTTGAGCCAGCCTTGAATATATTCT
AAAAGATTGTTATAGACAGTAGATTCATTTCCAGTATTATAAGAGATCTT
TCTGGGCCATGAGTGTGACGATCTGAGCTTTGAACTTAAAACAGTTTCTT
TGGGAACTAGAAAAATGTGGAAGAATGAAGAGTTTTACTTAGAGAATTTG
CCATATGTTAGAGAAGACAGATGCACAAAAATAAACTGGTATTAACTGGT
ATGTGTATCTGACAAAATTATTTCTAGAAATCCTGTGTTCTTTATATTGG
CTCTCTAAGCAACTTTTACATTAAAAAGAAAATTGTGTATAGGTGTTTTG
CCTGCATGTATGCCTGTATACCAAGTATGCCTAGTGCCAATGGAGGCCAG
AGGAGGGCATTTGACCCTGGAATTGGAGTTACACAGTTGTTAGCCACCAT
GTGAGTGCTGAGAATCAAACCTCCATCCTCTGTAAGAACAGTCAGTACTC
TTCAGCAATTTTAAATGAAAGTATTTTATTGGGGAGGGCTTTTCAAAACA
GGGACTAATGTAGCCCAGACCGGCCTAGAACTCACTATATAACTGAAGCT
AGCCTAGACCTCCTGATTCTCTTGCTCTACCNTCCCCAGTGCTAGGAATA
C

NAAAAAACCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACTGAGGAGGGGTAG
GGAAGTTTTCTCAAGGACGGTCATTTCTGGCAGCTGTGGCCTTTATGTCC
ACTAGTCTGTCCCTGCAGATAGGGAAGGGGCCGGGTGGTCTTGAATTTGT
TTACACTGTCAGGGAAAGGGAAGATTCTTTAAGCAGCAGGAGACAGCCAA
AGATAGTGGCTGGTGCAGACAGCAAGCTCTGCAAATAACTTTGGTATACA
TTAATTAAGCTAAAAACTATATTTCACGCCGGGCGTAGTGACACCCGCCT
TTGATCCCAGCACTTGGAAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGG
CCAGCCTGTTTTACAGAGTGAGTTCCAAGACAACCAGAGCTACACAGAGA
AACCCTATCTCGAAAAACCAAAAAAACAAAAACAAACCACCCCCTCAAAA
CAAACAACAAACTGTATTCCTTTACCCTGAAAGACAGGGCTGCTCTTCAA
GCATCTGTTTGGCCTCAAGTTTGGCGGGGGGGGGGGNNTGGGGNNTGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_j22.b1 MSMg01no520_j22.b1 CHROMAT_FILE:
MSMg01no520_j22.b1 PHD_FILE: MSMg01no520_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:43 2005
         (591 letters)



>mm_chr1_157884979_157885974
          Length = 996

 Score = 1116 bits (577), Expect = 0.0
 Identities = 587/593 (98%), Gaps = 5/593 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggattactatgagttaaagccaaattcttgtcaaaccagatattctgctgtaggtgtttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggattactatgagttaaagccaaattcttgtcaaaccagatattctgctgtaggtgtttt 263

                                                                       
Query: 64  ccaacctcttttgagccagccttgaatatattctaaaagattgttatagacagtagattc 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 ccaacctcttttgagccagccttgaatatattctaaaagattattatagacagtagattc 323

                                                                       
Query: 124 atttccagtattataagagatctttctgggccatgagtgtgacgatctgagctttgaact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttccagtattataagagatctttctgggccatgagtgtgacgatctgagctttgaact 383

                                                                       
Query: 184 taaaacagtttctttgggaactagaaaaatgtggaagaatgaagagttttacttagagaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaaacagtttctttgggaactagaaaaatgtggaagaatgaagagttttacttagagaa 443

                                                                       
Query: 244 tttgccatatgttagagaagacagatgcacaaaaataaactggtattaactggtatgtgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttgccatatgttagagaagacagatgcacaaaaataaactggtattaactggtatgtgt 503

                                                                       
Query: 304 atctgacaaaattatttctagaaatcctgtgttctttatattggctctctaa-----gca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||     |||
Sbjct: 504 atctgacaaaattatttctagaaatcctgtgttctttatattggctctctaaattaagca 563

                                                                       
Query: 359 acttttacattaaaaagaaaattgtgtataggtgttttgcctgcatgtatgcctgtatac 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acttttacattaaaaagaaaattgtgtataggtgttttgcctgcatgtatgcctgtatac 623

                                                                       
Query: 419 caagtatgcctagtgccaatggaggccagaggagggcatttgaccctggaattggagtta 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caagtatgcctagtgccaatggaggccagaggagggcatttgaccctggaattggagtta 683

                                                                       
Query: 479 cacagttgttagccaccatgtgagtgctgagaatcaaacctccatcctctgtaagaacag 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cacagttgttagccaccatgtgagtgctgagaatcaaacctccatcctctgtaagaacag 743

                                                                
Query: 539 tcagtactcttcagcaattttaaatgaaagtattttattggggagggcttttc 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcagtactcttcagcaattttaaatgaaagtattttattggggagggcttttc 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 996
Length adjustment: 10
Effective length of query: 581
Effective length of database: 986
Effective search space:   572866
Effective search space used:   572866
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no520_j22.g1 MSMg01no520_j22.g1 CHROMAT_FILE:
MSMg01no520_j22.g1 PHD_FILE: MSMg01no520_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:43 2005
         (491 letters)



>mm_chr2_163467278_163468168
          Length = 891

 Score =  248 bits (128), Expect = 8e-70
 Identities = 356/488 (72%), Gaps = 103/488 (21%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactgaggaggggtagggaagttttctcaaggacggtcatttctggcagctgtggcctt 60
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 201 agactgaggaggggtagggaagttttctcaaggacggttatttctggcagctgtggtctt 260

                                                                       
Query: 61  tatgtccactagtctgtccctgcagatagggaaggggccgggtggtcttgaatttgttta 120
           |||| ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||
Sbjct: 261 tatgaccactagtctgtccctgaagatagggaaggggcccagtggtcttgaatttgttta 320

                                                                       
Query: 121 cactgtcagggaaaggg-aagattctttaagcagcaggagacagccaa--agatagtg-- 175
           ||||| ||||| ||||| || ||||||||||||||||||||||||  |  |||||| |  
Sbjct: 321 cactggcaggggaaggggaa-attctttaagcagcaggagacagc--aggagatagggag 377

                                                                       
Query: 176 --gctggtgcaga-------cagca------------------------agctctgcaaa 202
             |||| ||||||       |||||                        ||||||| |||
Sbjct: 378 aagctgctgcagaaagcttgcagcaggagacagggaagcaaaagctgcaagctctgtaaa 437

                                                                       
Query: 203 taactttggtatacattaattaagctaaaaactatatttc------ac--gcc------- 247
           || ||||||| ||||| | |||||||| ||||| ||||||      ||  |||       
Sbjct: 438 tagctttggtgtacatcagttaagctagaaactgtatttcttcataactagccctggtta 497

                                                                       
Query: 248 -------------------------------gggcgtagtg----acacccgcctttga- 271
                                          |||||| |||    |||||    ||| | 
Sbjct: 498 aatgttgtccttataagagttgccttggaccgggcgtggtggcgcacacc----ttt-ag 552

                                                                       
Query: 272 tcccagcactt-ggaaggcagaggcaggcggatttctgagttcgaggccagcctgtttta 330
           ||||||||||  ||| | |||||||||||||||||||||||| |||||||||||| | ||
Sbjct: 553 tcccagcactcagga-gacagaggcaggcggatttctgagtttgaggccagcctggtcta 611

                                                                       
Query: 331 cagagtgagttccaagacaaccagagctacacagagaaaccctatctcgaaaaaccaaaa 390
           || ||||||||||| |||| |||| |||||||||||||| ||| |||| |||||  ||||
Sbjct: 612 caaagtgagttccaggacagccagggctacacagagaaaacctgtctc-aaaaa--aaaa 668

                   
Query: 391 aaacaaaa 398
           ||| ||||
Sbjct: 669 aaa-aaaa 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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