Query= MSMg01no520_o15.b1 MSMg01no520_o15.b1 CHROMAT_FILE:
MSMg01no520_o15.b1 PHD_FILE: MSMg01no520_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:05 2005
(711 letters)
>mm_chr1_126172337_126173448
Length = 1112
Score = 1330 bits (688), Expect = 0.0
Identities = 703/708 (99%), Gaps = 1/708 (0%)
Strand = Plus / Plus
Query: 5 gaattctctgttaatattctgctaaacaacaaactagtaagttgaagaattaggttaaag 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattctctgttaatattctgctaaacaacaaaccagtaagttgaagaattaggttaaag 264
Query: 65 aatactccaggaggcagttaaaaggataaagaaaacagaaaaaaagtgaaaaaaagtata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatactccaggaggcagttaaaaggataaagaaaacagaaaaaaagtgaaaaaaagtata 324
Query: 125 tgtaaggggtatgggaaatagaaaaatcagcattcattagtggaagtcgcagttaaaata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtaaggggtatgggaaatagaaaaatcagcattcattagtggaagtcgcagttaaaata 384
Query: 185 ctgaagaggggaatgtctgaataagtaacagccgaagactctgagagctaaggaaatctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgaagaggggaatgtctgaataagtaacagccgaagactctgagagctaaggaaatctg 444
Query: 245 caagcacagatgagaagggctcacaacactgtggattgagacttatgaacagggg-aaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 caagcacagatgagaagggctcacaacactgtggattgagacttatgaacaggggaaaaa 504
Query: 304 aaatcaagtttcatcatgtaaaaagctcaaaacagagttttacaagttccctgaagaaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatcaagtttcatcatgtaaaaagctcaaaacagagttttacaagttccctgaagaaaa 564
Query: 364 cagcttatgttcacaaagaagtgtgtgtcaaaaacaggagacacttaactgaacatgtat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagcttatgttcacaaagaagtgtgtgtcaaaaacaggagacacttaactgaacatgtat 624
Query: 424 ggccctcaaagccagcatttaagaaaaataaatgggttttcagagtgccaagggctccac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggccctcaaagccagcatttaagaaaaataaatgggttttcagagtgccaagggctccac 684
Query: 484 aattgtatccaatttaccatctttgaaaagagttttgaatatgactgcatcagaaaggac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aattgtatccaatttaccatctttgaaaagagttttgaatatgactgcatcagaaaggac 744
Query: 544 caaatggacaataagaaaatacaaataaaggtttaaccacattcattgatgactaacatt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caaatggacaataagaaaatacaaataaaggtttaaccacattcattgatgactaacatt 804
Query: 604 tatgcacataaaataatgtttactttttctttaatccatgaatatactgaatagcaagct 663
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 805 tatgcacataaaataatgtgtactttttctttaatccatgaatatacttaatagcaagct 864
Query: 664 catctctgaaagtttgagactagcctgatctacatagtgatatccagg 711
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 865 catctctgaaagtttgagactagtctgatctacatagtgatatccagg 912
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1112
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1102
Effective search space: 772502
Effective search space used: 772502
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no520_o15.g1 MSMg01no520_o15.g1 CHROMAT_FILE:
MSMg01no520_o15.g1 PHD_FILE: MSMg01no520_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:05 2005
(674 letters)
>mm_chr1_126209436_126210509
Length = 1074
Score = 1048 bits (542), Expect = 0.0
Identities = 629/674 (93%), Gaps = 26/674 (3%)
Strand = Plus / Minus
Query: 1 acagaaaggcactcatatataataatagtaacttacaattataatatatatatatatata 60
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 869 acagaaaggcactcatatataataatggtaacttacaat--------------------- 831
Query: 61 tatatatatatatatatatatacccaatctactgactattacagctagcctcctcaacta 120
||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 830 ----tatat-tttatacatatacccaatcttctgactattacagctagcctcctcaacta 776
Query: 121 catgcactatacttacattagttggcagtttggtaaaatcatctaatatgaagcttattt 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 catgcactatagttacattagttggcagtttggtaaaatcatctaatatgaagcttattt 716
Query: 181 tacaaagagaaggggaagattttgtgccattatttagtacctgtttttatgaagctaccg 240
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tataaagagatggggaagattttgtgccattatttagtacctgtttttatgaagctaccg 656
Query: 241 acaaggggcgacattggaaaacaatattagttgtttagttttgggatcatatggcagatg 300
||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 655 acaagggacgacattggaaaacaacattagttgtttagttttgggattttatggcagatg 596
Query: 301 ggaatctgagctctgcgacttcatgtcagcactgggtaaagggggcatgcttcatattac 360
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 595 ggaatttgagctctgcgacttcatgtcagcactgggtaaagggtgcatgcttcatattac 536
Query: 361 tacctcttggtaaaataaagtagaacagagaagctatcattaccatgaagtacctatttg 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tacctcttggtaaaataaaatagaacagagaagctatcattaccatgaagtacctatttg 476
Query: 421 actatacgtttgaaagccaatcatatgttagttgaagagacttcatgtagaattaggggg 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 actacacgtttgaaagccaatcatatgttagttgaagagacttcatgtagaattaggggg 416
Query: 481 accaaaattcaaactcttcagtttgaattacggctggagcggtaacttacttgttaaaat 540
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 415 accaaaattcaaactcttcagtttgaattagggctggagtggtaacttacttgttaaaat 356
Query: 541 gcctacattgctattaaggggatctaaattcaatcctagaacccatgcaagaaaggtaag 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 355 gcctacattgctattaaggggatctaaattcaatcctagcacccatgcaagaaaggtaag 296
Query: 601 tagggtagctcaggcttgtaatctcagtgctagggctgtggtagagggagtgagagtcaa 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 295 tagggtagctcaggcttgtaatctcagtgctagggctgtagtagagggagtgagagtcaa 236
Query: 661 gcagacatctagcc 674
||||||||||||||
Sbjct: 235 gcagacatctagcc 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
