GAGTACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATCAAGGAGGTTAGTGTGCTATCCCGTACAAAAGGTTACT
TTACTTACCATCAATAATTATACAAATTCAAACTGTTAATTAATTCATAA
CACTACAGTACAGTAGAAACTGTCTTTTGGTATAGTATTGTATATATCTC
ATTGGGATGACATGGGTTTAATGATACAAACCCCTGGAATCAGACCATTG
CTGTACTTTAGTAGCATTTACTGTGAATCTAATATAAAATAGACTCTCAA
CATTTGTTGAGTAAATGATGGAAAATTCCCAGATTGATATATAATATCAA
AAACAAACAAACAAACAAACAAACAAACTATGATTAATGAATCTAATCAA
GGTGTGTGTGTGTGTGTGTGTGTGTGAGACAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGGGAGAGAGAGAATCTTAATCACTGACTTGTTTGCAGTTTT
AGAGGTTTAGTCTATTATCAGCATATCGATAAGCAAGGTGGCAAGCATGG
TGCCATGCAGGTAGTCTTGGTGCTGGAGAAGGAATTGAGAGTTCTGTATC
TGAATTCTCAGGCAGTAGAAAGAGAGAAATTCTGAGTTGAGAATGGGTTA
TTTGAAACCTCAAAGTCCATTCACCCTCAGTGACCTGCTTCCTCCCATAA
GTCCACACTTCCAACTCTGTCAAATAGTGCCACTCCCTTTGAGCCTGTTG
AAGC

NCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATAACTAAACATGAT
AAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGA
AGCTGGAAGCAATCCCACTAAAATCAGGGATTAGACAAGGCTGCCCATTT
TCTCCCTACCTATTCAACATAGTATTTGAAGTCCTAGCCAGAGCAATTCG
ATAACAAAAGGAGATAAAGGGGATACAAATTGGAATATATAGTAAATATA
AGTGACCCTAAAAATTCCACCAGAAAACTCCTAAGCCTGATAAACAGCTT
CAATGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTC
TATACACAAAGGATAAACAGGCTGAGAAGGAAATTAGGGAAACAACACCC
TTCACAATAGTCACAAATAATATAAAATACCTTGGAGACTTCTGCAAAGC
TTCTGCAAGGCAAAACACACCGTCAATAAGACAAAAAGGCCACCAACAGA
TTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGAGACTAATATCCA
ATATATAAAGAACTCAAGAAGGTGAACTCCAAAAAATCAAATAACCCTAT
TAAAAAATTGGGTTCAGAGCTAAACAAAGAATTCGCACCTGAGGAATATC
AAATGGCTGAAAAGCACCTAAAAATGTTCAGCATTCTTAATCATCAGGA

Query= MSMg01no520_p17.b1 MSMg01no520_p17.b1 CHROMAT_FILE:
MSMg01no520_p17.b1 PHD_FILE: MSMg01no520_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:11 2005
         (704 letters)



>mm_chr1_108866851_108867954
          Length = 1104

 Score = 1207 bits (624), Expect = 0.0
 Identities = 688/722 (95%), Gaps = 22/722 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcaaggaggttagtgtgctatcccgtacaaaaggttactttacttaccatcaa 64
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcaaggaggttagtgtgctatcctgtacaaaaggttactttacttaccatcaa 264

                                                                       
Query: 65  taattatacaaattcaaactgttaattaattcataacactacagtacagtagaaactgtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taattatacaaattcaaactgttaattaattcataacactacagtacagtagaaactgtc 324

                                                                       
Query: 125 ttttggtatagtattgtatatatctcattgggatgacatgggtttaatgatacaaacccc 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 ttttggtatagtattgtatatatctcattgagatgacatgggtttaatgatacaaacccc 384

                                                                       
Query: 185 tggaatcagaccattgctgtactttagtagcatttactgtgaatctaatataaaatagac 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cggaatcagaccattgctgtactttagtagcatttactgtgaatctaatataaaatagac 444

                                                                       
Query: 245 tctcaacatttgttgagtaaatgatggaaaattcccagattgatatataatatcaaaaac 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 tctcaacatttgttgagtaaatgatggaaaattcccagattgatttataatatcaaaaac 504

                                                                       
Query: 305 aaacaaacaaacaaacaaacaaac----tatga--------ttaatgaatctaatcaagg 352
           ||||||||||||||||||||||||    |||||        |||||||||||||||||||
Sbjct: 505 aaacaaacaaacaaacaaacaaacaacctatgaaggacttattaatgaatctaatcaagg 564

                                                                       
Query: 353 tgtgtgtgtgtgtgtgtgtgtgtg----------agacagagagagagagagagagagag 402
           ||||||||||||||||||||||||          ||| ||||||||||||||||||||||
Sbjct: 565 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagag 624

                                                                       
Query: 403 agagagagggagagagagaatcttaatcactgacttgtttgcagttttagaggtttagtc 462
           |||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 625 agagagagagagagagagaatcttaatcagtgacttgtttgcagtcttagaggtttagtc 684

                                                                       
Query: 463 tattatcagcatatcgataagcaaggtggcaagcatggtgccatgcaggtagtcttggtg 522
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 685 tattatcagcatatcgataagcaaggtggcaagcatggtgccatgcaggaagtcttggtg 744

                                                                       
Query: 523 ctggagaaggaattgagagttctgtatctgaattctcaggcagtagaaagagagaaattc 582
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 745 ctggagaaggaattgagagttctgtatctgaattctcaggcagtaaaaagagagaaattc 804

                                                                       
Query: 583 tgagttgagaatgggttatttgaaacctcaaagtccattcaccctcagtgacctgcttcc 642
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgggttgagaatgggttatttgaaacctcaaagtccattcaccctcagtgacctgcttcc 864

                                                                       
Query: 643 tcccataagtccacacttccaactctgtcaaatagtgccactccctttgagcctgttgaa 702
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 865 tcccataagtccacacttccaactctgtcaaatagtgccattccctttgagcctgttgaa 924

             
Query: 703 gc 704
           ||
Sbjct: 925 gc 926


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space:   759236
Effective search space used:   759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)