BAC Information

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BAC

Clone NameMSMg01-521D14
Chromosome1 (Build37)
Map Location 173,458,208 - 173,458,908
singlet/doubletsinglet
Overlap geneItlna
Upstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2
Downstream geneCd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521D14.T7 (MSMg01no521_d14.b1)MSMg01-521D14.TJ (MSMg01no521_d14.g1)
ACCAG592069AG592070
length751751
length of high quality
(start - end)		708 (44 - 751)508 (176 - 683)
definitionCHROMAT_FILE: MSMg01no521_d14.b1 PHD_FILE: MSMg01no521_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:29 2005CHROMAT_FILE: MSMg01no521_d14.g1 PHD_FILE: MSMg01no521_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCTTTGATATCATGAAACCATGAAACAGAGCTGCCTGTCTGGAGC
TAAGGATCCTTTTCTCAGACTGTTACTTTGAGGAGGTCTGGGTTCCAAGA
GAACCTGGTATTCTTGGTAATTCCTACTGTTGACTACCCAGAGATTTTCT
CGGCATTCTGCTTTTCTGCTACAAACTAGAAAAACAAACAAACAAACAAA
CAAACAAACAAACAAACAGCGAGAATCTAATGATCCCAGGCTTAGGGAAA
TATCAGATAGCTGCAGTGGAACTAAGTGTACCTGACCTCACAATCAGTAT
ATATGCTGATCTCTAACCAGAGAAAGCTCCTGTGTTATGGAGGAGAATAG
TGTGAGTGAGGTCTACCAGATGTCTGACCTCTTCTAGTAACTTCTCAACA
CAATGAGTATCTGTACAAGCCCTGGAAAGGATACATTTCACTGTGAAAGC
TAAAGCTAAACCCTGGGTGGAGAGCAACACGTGTTATCTCTTTAACCCCA
AAGGCATTGACAATGTCTGTATTGACCTTAAGACCCCAAAGGCTTCTACA
GGTCTTCCTAAACACAATGTCACTCTAGGTCTATGTAGCAGGTGTTTTAT
CATAAAATCTAACCAAACAGCAGCAGTACATTAGAAATTTGTAATGTTGA
CTTTGGCCTTCTACAGATTGAATATTTGTTTCTAGACAGAAGTTCTGATC
C

CCATGCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGAAGGTGGACTCCAGAAAATCAAA
TAACCCCATTTAAAAAATGGGGCTCAAAGCTAAACAAAGAATTCTCACCT
GAGGAATACCGAATGGCTGAAAAGCACCTGAAAAAATGTTCAACATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGATGACAGCAGATGCTGGCGA
GGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCT
TGTACAACCACTCTGGAAAGCAGTCTGGTGGTTCCTCAGAAAACTGGATA
TAGTACTATTGAAGGATCCTGTAATACCTCTCCTGGGCATATATCCAGAA
GATGTTCCAATCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAG
AGGACTGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCA
GCTATTAAAAAGAATGAATTTATGAAATTTCTAGGCAAATGGATGGACCT
GGAGGGCATCATCCTGAGTGAGGTAACTCAATCACAAAGGAACTCACACA
ATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGATATCCA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_d14.b1 MSMg01no521_d14.b1 CHROMAT_FILE:
MSMg01no521_d14.b1 PHD_FILE: MSMg01no521_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:29 2005
         (708 letters)



>mm_chr1_173458001_173459108
          Length = 1108

 Score = 1340 bits (693), Expect = 0.0
 Identities = 699/701 (99%), Gaps = 1/701 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattctttgatatc-atgaaaccatgaaacagagctgcctgtctggagctaaggatcct 67
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctttgataaccatgaaaccatgaaacagagctgcctgtctggagctaaggatcct 267

                                                                       
Query: 68  tttctcagactgttactttgaggaggtctgggttccaagagaacctggtattcttggtaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tttctcagactgttactttgaggaggtctgggttccaagagaacctggtattcttggtaa 327

                                                                       
Query: 128 ttcctactgttgactacccagagattttctcggcattctgcttttctgctacaaactaga 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttcctactgttgactacccagagattttctcggcattctgcttttctgctacaaactaga 387

                                                                       
Query: 188 aaaacaaacaaacaaacaaacaaacaaacaaacaaacagcgagaatctaatgatcccagg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaaacaaacaaacaaacaaacaaacaaacaaacaaacagcgagaatctaatgatcccagg 447

                                                                       
Query: 248 cttagggaaatatcagatagctgcagtggaactaagtgtacctgacctcacaatcagtat 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cttagggaaatatcagatagctgcagtggaactaagtgtacctgacctcacaatcagtat 507

                                                                       
Query: 308 atatgctgatctctaaccagagaaagctcctgtgttatggaggagaatagtgtgagtgag 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atatgctgatctctaaccagagaaagctcctgtgttatggaggagaatagtgtgagtgag 567

                                                                       
Query: 368 gtctaccagatgtctgacctcttctagtaacttctcaacacaatgagtatctgtacaagc 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gtctaccagatgtctgacctcttctagtaacttctcaacacaatgagtatctgtacaagc 627

                                                                       
Query: 428 cctggaaaggatacatttcactgtgaaagctaaagctaaaccctgggtggagagcaacac 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cctggaaaggatacatttcactgtgaaagctaaagctaaaccctgggtggagagcaacac 687

                                                                       
Query: 488 gtgttatctctttaaccccaaaggcattgacaatgtctgtattgaccttaagaccccaaa 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gtgttatctctttaaccccaaaggcattgacaatgtctgtattgaccttaagaccccaaa 747

                                                                       
Query: 548 ggcttctacaggtcttcctaaacacaatgtcactctaggtctatgtagcaggtgttttat 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ggcttctacaggtcttcctaaacacaatgtcactctaggtctatgtagcaggtgttttat 807

                                                                       
Query: 608 cataaaatctaaccaaacagcagcagtacattagaaatttgtaatgttgactttggcctt 667
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 cataaaatctaaccaaacagcagcagtacattagaaatttgtaatgttgactttggcctt 867

                                                    
Query: 668 ctacagattgaatatttgtttctagacagaagttctgatcc 708
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ctacagattgaatatttgtttctagacagaagttctgatcc 908


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space:   766404
Effective search space used:   766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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