BAC Information

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BAC

Clone NameMSMg01-521G08
Chromosome1 (Build37)
Map Location 120,431,338 - 120,431,709
singlet/doubletsinglet
Overlap geneClasp1
Upstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip
Downstream geneTcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521G08.T7 (MSMg01no521_g08.b1)MSMg01-521G08.TJ (MSMg01no521_g08.g1)
ACCAG592201AG592202
length744744
length of high quality
(start - end)
375 (189 - 563)439 (78 - 516)
definitionCHROMAT_FILE: MSMg01no521_g08.b1 PHD_FILE: MSMg01no521_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:43 2005CHROMAT_FILE: MSMg01no521_g08.g1 PHD_FILE: MSMg01no521_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAATTTGACGAAATAGATGTTAAATTCTGTCCTTGTGAAGAG
AGTAACTTTGAAAAATATTAAAGTATAAGAAATTGGTCTGAAATACTGAT
GTCCCAGGTCCATATAATAATATTCACCTACTTGTCTAGTGAGAAGAACG
GGAGGCACCCGTTCCCTTGGTGCTGTATTATAGAATGTCCACATGTTTAA
CCAAATCACAGCAAGGCAAAAAACCCTTTACGCCCCTCTGTTATTCTGCA
CATATTAAAACTCACACATTTAGTCATAAAGCATCAAAGCTTCTAGCTCC
AAAGTAACTGTGTTTCTAAGCTCCCATGTCACTTTATAAAATATATACCC
CATGGCAGATGTGACATCAAAAAGCAAACATTACCTGTTAAGCAATACAA
ATGTTAGCAGCTTGAAATTAAAAAGGAGGGGGAGGGGATCTTCCTTTTGG
AAGATTCACATATAAAACAGTGAGCTGATGTATCTAAAACAAGACTTACC
ACTTTCCTGGACGAGGAGGCTGGTTAATGTTTTGCTGCGACCAGAGTGAA
CTGCAAAGTTCTTATCTACCGCATGAGCACTGTATCTTGACAGCTTACAC
TGAACATGTGTTTAAGCAACACTTGTTCTGTTGGTAGGTTTCTTAAAATG
TATTTCTGTGGNTTGGACACAATACTCTACAGCATGTCTGTTGT
TTATCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTAGCCTCAGGGGACTAGACCA
GAAAAAGTGCAAGGCAAGACCCAAAGGCTGGTTTTTTTTTATGGGTGGTG
TTAGCCTTCCTTCTAGGTTCCGCCCAACAGTTACCTAGCAACTGCCAGGT
AAGCCTAGCTTGCTATAAAAGGGGCTGCTTGGCCTCTCTTCTCTCTCTGC
CCCTTTTCTCTCTCTTCACTCTCTCTCTCTCTCTCACCCCTTTCTTCCTC
TCCCCACCACGTGTTCCTGTCTTGCCTCTTCTCTTTCTCTCTTTCTCCCC
TCTTTCTCTGCCTCGACTCCCTTCTCAACCTCCCTTCTCATGCCCCCAAA
TAAACTCTATTCTATACTAGCCCTGTCTTATGGGTGGTACCTGGGAGGAG
GAATGCCTCAGGATGGGCCCGCTAGGTACCCCCTCCCACTTACCAAATCT
ATCCTTGGTTCTACAAAACATATCATATGGTATGCTAAGGAAAATGATCT
GTCATCCATACTCTGGTCTTAAGCCCAGTTACAGTCATTTAATGGCATGG
GCCTGAGTGGCTCGTGACTCCTGGTGTAAGGGGTTGTGACCGCTGTCACG
AATGCTTAATTGGGTTTTTGGTATCTTTTTCTGCCCTCATGCTTTCATAG
TGGGCCATTTTTTATACGGAGAAAAAAATGGTATTTAAGTCGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_g08.b1 MSMg01no521_g08.b1 CHROMAT_FILE:
MSMg01no521_g08.b1 PHD_FILE: MSMg01no521_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:43 2005
         (375 letters)



>mm_chr1_120431138_120431909
          Length = 772

 Score =  636 bits (329), Expect = 0.0
 Identities = 363/375 (96%), Gaps = 3/375 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgagaagaacgggaggcacccgttcccttggtgctgtattatagaatgtccacatgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gtgagaagaacgggaggcacccgttcccttggtgctgtattatagaatgtccacatgttt 513

                                                                       
Query: 61  aaccaaatcacagcaaggcaaaaaaccctttacgcccctctgttattctgcacatattaa 120
           |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||
Sbjct: 512 aaccaaatcacagcaaggc--aaaaccctttacggccctctgttattctgcacatattaa 455

                                                                       
Query: 121 aactcacacatttagtcataaagcatcaaagcttctagctccaaagtaactgtgtttcta 180
           ||||||||||||||||||||||||| |||||| |||| |||||| |||| ||||||||||
Sbjct: 454 aactcacacatttagtcataaagcaccaaagcctctaactccaatgtaattgtgtttcta 395

                                                                       
Query: 181 agctcccatgtcactttataaaatatataccccatggcagatgtgacatcaaaaagcaaa 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 394 agttcccatgtcactttataaaatatataccccatggcagatgtgacatcaaaaa-caaa 336

                                                                       
Query: 241 cattacctgttaagcaatacaaatgttagcagcttgaaattaaaaaggagggggagggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cattacctgttaagcaatacaaatgttagcagcttgaaattaaaaaggagggggagggga 276

                                                                       
Query: 301 tcttccttttggaagattcacatataaaacagtgagctgatgtatctaaaacaagactta 360
           ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 275 tcttctttttggaagattcacatacaaaacagtgagctgatgtatctaaaacaagactta 216

                          
Query: 361 ccactttcctggacg 375
           |||||||||||||||
Sbjct: 215 ccactttcctggacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 772
Length adjustment: 9
Effective length of query: 366
Effective length of database: 763
Effective search space:   279258
Effective search space used:   279258
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)