Query= MSMg01no521_h21.b1 MSMg01no521_h21.b1 CHROMAT_FILE:
MSMg01no521_h21.b1 PHD_FILE: MSMg01no521_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:50 2005
(549 letters)
>mm_chr1_161130097_161131045
Length = 949
Score = 1009 bits (522), Expect = 0.0
Identities = 540/546 (98%), Gaps = 1/546 (0%)
Strand = Plus / Minus
Query: 5 gaattctcttcct-tttacatttttgagaaaaattcttattcatttttctgtaagctttt 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 gaattctcttcctcttaacatttttgagaaaaattcttattcatttttctgtaagctttt 824
Query: 64 gatagaattcagcaatgaacacacccagttcctgccttttctctgatggaaggcactttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gatagaattcagcaatgaacacacccagttcctgccttttctctgatggaaggcactttc 764
Query: 124 tttcttaatccatccaaggatttttaaaaatcccatctatttgttttcttatcttgcttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tttcttaatccatccaaggatttttaaaaatcccatctatttgttttcttatcttgcttt 704
Query: 184 tctgtatttaagtattgaggagtaaacagatccttgagcatgccaggcaagagttctgtc 243
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tctgtttttaagtattgaggagtaaacagatccttgagcatgccaggcaagagttctgtc 644
Query: 244 actgagtttacagccataaaaagtgggctaccagtctaagacactgcccctttggaggaa 303
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 643 actgagtttacagccataaaaagtgggctaccagtccaagacactgcccctttggaggaa 584
Query: 304 gcccatacacttttggaagagttccttcaggtaaaacaagcttgtccattgtgattaata 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gcccatacacttttggaagagttccttcaggtaaaacaagcttgtccattgtgattaata 524
Query: 364 gactgttaagttccccttgacccttgaattattttaacacaacataccatattaattgtg 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gactgttaaattccccttgacccttgaattattttaacacaacataccatattaattgtg 464
Query: 424 gataacaagactaacaagcatcggatcaaatcagctgtgaagaaattgtattccattgac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gataacaagactaacaagcatcggatcaaatcagctgtgaagaaattgtattccattgac 404
Query: 484 aggctaaaggccaataccctgatcaggcctgtgagaatgaaggtacgtgtcttaatggtt 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 403 aggctaaaggccaataccctgatcaggcctgtgagaatgaaggtacgtgtcttagtggtt 344
Query: 544 cctgtt 549
||||||
Sbjct: 343 cctgtt 338
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_h21.g1 MSMg01no521_h21.g1 CHROMAT_FILE:
MSMg01no521_h21.g1 PHD_FILE: MSMg01no521_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:51 2005
(555 letters)
>mm_chr1_161024191_161025143
Length = 953
Score = 1000 bits (517), Expect = 0.0
Identities = 545/555 (98%), Gaps = 2/555 (0%)
Strand = Plus / Plus
Query: 1 cctatcaaaggaagtggacgagggaaacagatctgtcactctgcaaaggcttgtaaccaa 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctatcaaaggaagtggaggagggaaacagatctgtcactctgcaaaggcttgtaaccaa 260
Query: 61 agtgactagtgatacagccctctgcagtgagaagatacatccacagtagagtgcagcagt 120
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgactagtgttacagccatctgcagtgagaagatacatccacagtagagtgcagcagt 320
Query: 121 ctcctgaaatgaacagtagagcaaagctgggaatgcacagtatgtttcaacatacatata 180
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ctcctgagatgaacagtagagcaaagctgggaatgcacagtatgcttcaacatacatata 380
Query: 181 acagaatagggcctaagggtggtagctggtataagttttgtacccctatgtcaaccatgt 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 acagaatagggcctaagggtggtagctggtataagttttgtacctctatgtcaaccatgt 440
Query: 241 tgactctctctaagaggaaatggcaatttggttatggtgatattaaggggagaagaatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgactctctctaagaggaaatggcaatttggttatggtgatattaaggggagaagaatct 500
Query: 301 ttagtaaggggtctcactattgatagtcaactcctagcaactggaacagtaagggttcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 ttagtaaggggtctcactattgatagtcaactcctagcaactggaacagtaagagttcta 560
Query: 361 gtcctcaaagaaagatgatgtcagagtaccacagtgtgtatcacaatctgctcaattaat 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 gtcctcaaagaaagatgatgtcagagtaccacagtgtgtatcataatctgctcaattaat 620
Query: 421 aaaagcaacatactgaatatatgtgagatctcatctttctgaagtttcctaaacccatag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaagcaacatactgaatatatgtgagatctcatctttctgaagtttcctaaacccatag 680
Query: 481 aaacaaaaataagaccgaggtctagccactgggcagatgagcattacttgtcaacagact 540
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 aaacaaaaataagaccgaggtctagccactg--cagatgagcattacttgtcaacagact 738
Query: 541 ggtggacaaactgtt 555
|||||||||||||||
Sbjct: 739 ggtggacaaactgtt 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 953
Length adjustment: 10
Effective length of query: 545
Effective length of database: 943
Effective search space: 513935
Effective search space used: 513935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
