Query= MSMg01no521_i13.b1 MSMg01no521_i13.b1 CHROMAT_FILE:
MSMg01no521_i13.b1 PHD_FILE: MSMg01no521_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:54 2005
(561 letters)
>mm_chr1_189273443_189274411
Length = 969
Score = 938 bits (485), Expect = 0.0
Identities = 547/571 (95%), Gaps = 12/571 (2%)
Strand = Plus / Minus
Query: 1 tgtgagtcactgtaacaaaacaaacaaaggaacgaatggatgagtgaacaaaaga---tg 57
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 769 tgtgagtcactgtaacaaaacaaacaaaggaacgaatggatgagtgaacaaaagattctg 710
Query: 58 -ctaagtgatccactgaaggttgaggagcaatgggggctgggctggaagtagaaccaagt 116
|||||||| ||||||||||| ||| ||||||||||||||||||||||||||| |||||
Sbjct: 709 tctaagtgacccactgaaggtcaaggtgcaatgggggctgggctggaagtagaatcaagt 650
Query: 117 atttctgtc-tgttaggtctttgcagtgctccaggctacttcttatttaagcctgtgttc 175
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 atttctgtcttgttaggtctttgcagtgctccaggctacttcttatttaagcctgtgttc 590
Query: 176 tctagaactgccaagtacctacagagaacttctctttgggtgagcatggcaggctagaat 235
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 589 tctagaactgccaagtacctacagagaacttctccttgggtgagtgtggcaggctagaat 530
Query: 236 g-gggggggtgggg--ggccgca--tgattggtcaatttgtgaactggacagttcaaagc 290
| |||| |||||| || | | ||||||||||||||||||||||||||||||||| |
Sbjct: 529 gcaggggtgtgggggtgg--gaatgtgattggtcaatttgtgaactggacagttcaaaac 472
Query: 291 aagagaggggaggcccgatagaggaggatgaatatcctcaaatttcctcttcctctccgt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aagagaggggaggcccgatagaggaggatgaatatcctcaaatttcctcttcctctccgt 412
Query: 351 tctcagcaggtcttagcagcccccgtttcaggtctggtttagtgccaggtgcacatgtta 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tctcagcaggtcttagcagcccccgtttcaggtctggtttagtgccaggtgcacatgtta 352
Query: 411 gaggtcttgccgggttgcctttagggcaaagaacatgaaatagagccatggtacctgttc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gaggtcttgccgggttgcctttagggcaaagaacatgaaatagagccatggtacctgttc 292
Query: 471 ttagggtaacccagagggagctaagggtagagggttgtatcacaggaatcttctgtgtct 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttagggtaacccagagggagctaagggtagagggttgtatcacaggaatcttctgtgtct 232
Query: 531 aggaaaccccaacaccttccaagccggagcc 561
|||||||||||||||||||||||||||||||
Sbjct: 231 aggaaaccccaacaccttccaagccggagcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 969
Length adjustment: 10
Effective length of query: 551
Effective length of database: 959
Effective search space: 528409
Effective search space used: 528409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_i13.g1 MSMg01no521_i13.g1 CHROMAT_FILE:
MSMg01no521_i13.g1 PHD_FILE: MSMg01no521_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:54 2005
(392 letters)
>mm_chr1_189084970_189085761
Length = 792
Score = 735 bits (380), Expect = 0.0
Identities = 389/392 (99%)
Strand = Plus / Plus
Query: 1 gtcaaggtcctattggaaagctcaaagccaacatcttaattcagacttagctatcccgct 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcaaggtcctattggaaagctcagagccaacatcttaattcagacttagctatcccgct 260
Query: 61 cacttgtatgtgcaattgtaagcaattttttcaagtcacaactctctattagaacgggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacttgtatgtgcaattgtaagcaattttttcaagtcacaactctctattagaacgggat 320
Query: 121 tcatttagttcaaaggggatagttgtgcatgtgaattacgtggctggctaccctggcgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatttagttcaaaggggatagttgtgcatgtgaattacgtggctggctaccctggcgta 380
Query: 181 aatggagtacatagaaatctgggcatctcatttgtgtggtggtgtggtatgcatgcttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatggagtacatagaaatctgggcatctcatttgtgtggtggtgtggtatgcatgcttct 440
Query: 241 gttaccaggttagagagattgaacaaaacttggaagtcctttaccattgtcttcgtgcac 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 gttaccaggttagagagattgaacaaaacttggaagtcctttaccattgtcttcttgcac 500
Query: 301 ccagacttcatgttgcataatttgcagtggtaaaacatgatttaatggtatgaagttcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagacttcatgttgcataatttgcagtggtaaaacatgatttaatggtatgaagttcta 560
Query: 361 ggaccgtgtcctctgactttaagctggagcct 392
|||| |||||||||||||||||||||||||||
Sbjct: 561 ggacggtgtcctctgactttaagctggagcct 592
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space: 299889
Effective search space used: 299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
