Query= MSMg01no521_k07.b1 MSMg01no521_k07.b1 CHROMAT_FILE:
MSMg01no521_k07.b1 PHD_FILE: MSMg01no521_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:02 2005
(265 letters)
>mm_chr1_106198575_106199238
Length = 664
Score = 476 bits (246), Expect = e-139
Identities = 258/262 (98%), Gaps = 1/262 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaggagaaaagttggaatattctaacaggatccagatccctacagaacaaaata 63
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattcaggagaaaagttggaatattctaacaggatccagatccctacataacaaaata 263
Query: 64 aacatgcaaagcattaaaaggcaataaaccattggaagttacatagagcacaaaggttaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacatgcaaagcattaaaaggcaataaaccattggaagttacatagagcacaaaggttaa 323
Query: 124 atgaaaactcaaattcagaaaaaaaattcataaagaatatactctggattttttcatctt 183
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 324 atgaaaactcaaattcagaaaaaaa-ttcataaagaatatactctggattttttcatctt 382
Query: 184 gaaaattgatcttaacaaattagccattagtgagtgtgtgtgtgtgtgtgtgtgtgtgtg 243
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 383 gaaaaatgatcttaacaaattagccattagtgagtgagtgtgtgtgtgtgtgtgtgtgtg 442
Query: 244 tgtgtgtgtgtgtgtgtgtgtg 265
||||||||||||||||||||||
Sbjct: 443 tgtgtgtgtgtgtgtgtgtgtg 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 664
Length adjustment: 9
Effective length of query: 256
Effective length of database: 655
Effective search space: 167680
Effective search space used: 167680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no521_k07.g1 MSMg01no521_k07.g1 CHROMAT_FILE:
MSMg01no521_k07.g1 PHD_FILE: MSMg01no521_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:02 2005
(542 letters)
>mm_chr1_106248583_106249527
Length = 945
Score = 760 bits (393), Expect = 0.0
Identities = 404/409 (98%), Gaps = 3/409 (0%)
Strand = Plus / Minus
Query: 137 acaaaccgaacaggttttatttgggaatatatatctataatatgattaatcttatgttta 196
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 acaaactgaacaggttttatttgggaatatatatctataatatgattaatcttatgttta 886
Query: 197 taagaatatatattcatatatgcatataatgacattaaaaatgaggccaagaattttgat 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 taagaatatatattcatatatgcatataatgacattaaaaatgaggccaagaattttgat 826
Query: 257 agcgagcaagaaagaatataggaaaggaggaaagggaagggagaaatattgtaaatgtat 316
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 825 agcgagcaagaaagaatataggacaggaggaaagggaagggagaaatattgtaaatgtat 766
Query: 317 tataatctcaaaaacaaaaacaaagttaaatggcaaagttaactggaattaaaagctttc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tataatctcaaaaacaaaaacaaagttaaatggcaaagttaactggaattaaaagctttc 706
Query: 377 gaaaatggtgtcaattaatttataaaaaaatacaatgaccgtgcaagtacatggaaaata 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gaaaatggtgtcaattaatttataaaaaaatacaatgaccgtgcaagtacatggaaaata 646
Query: 437 attatggtactgtttctttgaagttcaccagtatacttctaaatactaacaatttggaaa 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 attatggtactgtttctttgaagttcaccagtatacttctaaatactaacaatttggaaa 586
Query: 497 gtttttgcttccatg---ttttttttttaatatccatttaactttactg 542
||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 585 gtttttgcttccatgtttttttttttttaatatccatttaactttactg 537
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 945
Length adjustment: 10
Effective length of query: 532
Effective length of database: 935
Effective search space: 497420
Effective search space used: 497420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
