NNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTACCAGCCTGAATGACTGCCCTGAAGGTCATAGTTTCA
CAGGAACATTTGCTTGCTTCCTGGAATTTTGATGTTTCTGATTATTAAGG
AGTCATTAACCTTGGCAGAGAGAACATTCCTAGGAAGGAGGAATAGAAGG
TAAAATGTTATACAAATGAGCTGTGTGCCTAGAGCAACGGTCAACACTCC
TGCAGACTCATGTGTTGCTGACACTGCTCTGCTTCAAAGGTGAGGAATAT
ATGACACTGTCCCTTCAATAACCATTCAGGACTTGGTAGAGCTTATATAT
CCAAGGAGGAGTACAATAAAAATAAAAGAAATAATTTGTGTATGATGTTA
GGAAGATCAAAATATTCTGTTAAGGAAGGTGCAAAAGGGCAGAAAAACTT
ATCTGTGTCAGAAGTAGAATGATGTTTGATGCTTTGGAATACCTAAGAGT
CAGGGGAATAGATTAACTCTTAGTCTATGATGCATGACTACATTTTTTTT
CCATTTTTATTAGGTATTTAGCATATTTACATTTCCAATGGCTATACCAA
AAGTCCCCCATAGNCACCCACCCCCACTCCCCTACCCACCCACTCCCCTT
TTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCCTGTCC
AATGGGCCTCTCTTTTCAGTGATGGCCGACTAGGCCATCTTTTGATACAT
ATGCAGC

NAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCACACATACAGAGAGACAGA
GAGAGAGCGAGAGAGAGCGCAATATTATAGCAACAATAAAAAAATCCAGA
ATTCTGCAATTACAGGGAACATTGGTTTTCTTCTTGAGGAACAGTAAATC
CAGGTTTCAGTATCCTTTTCCATACTAACGTCTGCATTAGAGGACAGGTT
CTTTTCCACTATATAGAGCAAAACTCATACTAAGCCACTCAACTAAAAAA
GGTTGTTAACACTGGACCTATATCACATTTCCAGCCAAGGAATGTTAGAC
TAAAGATTTTAATATTTACTTTCGCAGATATGTGTACTTATTTCTATTAT
CAATCTTTAAACTTGGAAGATAGAAATGAATTGCATTACATTTTTGAGTA
AAAGATTTTTTTAAAATAAAGAGAAATGTATCTGGAAAGGAAATTTGACA
GTAGATGTTTGGACTCTGAAGATACATATCTTTAGTATTTGAATGAATTG
AGCCTGAACTCCATTATTTAATTTTTCCTCTTTCTATTTTCTTAAGAATA
CAATTCTGTTATTTTCTTTATTTTCTTGGTATTGGNTTTTATTTTCTTTT
AATAAAGAAATTATTGTTTTCCCAAACAGACACTTCAGTAACACAGATAC
TTTGTTAGAGCAATTATAAAAAAAAAAGCTCCAAATGAAAGATTAAGGAC

Query= MSMg01no521_k18.g1 MSMg01no521_k18.g1 CHROMAT_FILE:
MSMg01no521_k18.g1 PHD_FILE: MSMg01no521_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:05 2005
         (551 letters)



>mm_chr1_103641005_103641953
          Length = 949

 Score =  944 bits (488), Expect = 0.0
 Identities = 526/540 (97%), Gaps = 4/540 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  agagagacagagagagagcgagagagagcgcaatattatagcaacaataaaaaaatccag 72
           ||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 778 agagagagagagagagagagagagagagagcaatattatagcaacaataaaaaaatccag 719

                                                                       
Query: 73  aattctgcaattacagggaacattggttttcttcttgaggaacagtaaatccaggtttca 132
           ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 718 aattctgcaattacagggaacattggttttcttcttgtggaacagtgaatccaggtttca 659

                                                                       
Query: 133 gtatccttttccatactaacgtctgcattagaggacaggttcttttccactatatagagc 192
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 658 gtatccttttccatactaacgtctgcatttgaggacaggttcttttccactatatagagc 599

                                                                       
Query: 193 aaaactcatactaagccactcaactaaaaaaggttgttaacactggacctatatcacatt 252
           |||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 598 aaaactcaaactaagccactcaactaaaaaaggtt---aacactggacctatatcacatt 542

                                                                       
Query: 253 tccagccaaggaatgttagactaaagattttaatatttactttcgcagatatgtgtactt 312
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 541 tccagccaaggaatgttagactaaagatttttatatttactttcgcagatatgtgtactt 482

                                                                       
Query: 313 atttctattatcaatctttaaacttggaagatagaaatgaattgcattacatttttgagt 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 481 atttctattatcaatctttaaacttggaagatagaaatgaattgcattacattattgagt 422

                                                                       
Query: 373 aaaagatttt-tttaaaataaagagaaatgtatctggaaaggaaatttgacagtagatgt 431
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaaagattttgtttaaaataaagagaaatgtatctggaaaggaaatttgacagtagatgt 362

                                                                       
Query: 432 ttggactctgaagatacatatctttagtatttgaatgaattgagcctgaactccattatt 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttggactctgaagatacatatctttagtatttgaatgaattgagcctgaactccattatt 302

                                                                       
Query: 492 taatttttcctctttctattttcttaagaatacaattctgttattttctttattttcttg 551
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tactttttcctctttctattttcttaagaatacaattctgttattttctttattttcttg 242


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 949
Length adjustment: 10
Effective length of query: 541
Effective length of database: 939
Effective search space:   507999
Effective search space used:   507999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)