Query= MSMg01no521_o16.b1 MSMg01no521_o16.b1 CHROMAT_FILE:
MSMg01no521_o16.b1 PHD_FILE: MSMg01no521_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:23 2005
(708 letters)
>mm_chr1_3833778_3834886
Length = 1109
Score = 1224 bits (633), Expect = 0.0
Identities = 688/707 (97%), Gaps = 6/707 (0%)
Strand = Plus / Plus
Query: 5 gaattccagaatattcttagtgtactggtaatgaatgaaattatgaacaaattgtctcca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaatattcttagtgtactggtaatgaatgaaattatgaacaaattgtctcca 264
Query: 65 tgtttttgggctcagtgagaacttgtgaattttatactttgaacttacctcactttggtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtttttgggctcagtgagaacttgtgaattttatactttgaacttacctcactttggtt 324
Query: 125 ttgttctttctctgatttaaatttaactcttcttattactgtgtgtctatagctcatagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgttctttctctgatttaaatttaactcttcttattactgtgtgtctatagctcatagc 384
Query: 185 acaacctataggagttttttctcccctttgtagtgatt-aaatgggacatactctcatct 243
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 acaacctataggagttttttctcccctttgtagtgatttaaatgggacatactctcatct 444
Query: 244 ttctgatgaccttgtagcaaagctacaagttattagtcagttctcctatatttatggccc 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 ttctgatgaccttgtagcaaagctacaagttattagtcagttctcctatatttatggcgc 504
Query: 304 atatcgccataggattccaggga-at-atgatgtgtgccttcacatccaggttttagtag 361
||||| |||||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 505 atatcaccataggattccag--atattatgatgtgtgccttcacatccaggttttagtag 562
Query: 362 gttctgagaattgaactggattggccagactaccacagcaagcatattttttcacagaac 421
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gttctgggaattgaactggattggccagactaccacagcaagcatattttttcacagaac 622
Query: 422 cacaactctggacacatatcactatgaaacagctaggtttcaagtgttaaacatatacgt 481
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 623 cacaactctggacacatatcactctgaaacagctaggtttcaagtgttaaacatatacat 682
Query: 482 aaattttgtttttaatattgcctcacctatatactcatataatactttcattgtattcac 541
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 683 aaattttgtttttaatattgcctcacctatatactcatatggcacattcattgtattcat 742
Query: 542 tctttttttttaattaggtattttcctcatttacatttccaatactatccaaaaagtccc 601
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tctttttttt-aattaggtattttcctcatttacatttccaatactatccaaaaagtccc 801
Query: 602 caatacactacctccaactcccctacccagccactcccactttttggccctggcgttccc 661
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 caatacacgacctccaactcccctacccagccactcccactttttggccctggcgttccc 861
Query: 662 ctgtactggggcatataaagtttgcaagtccaatgggcctctttttc 708
|| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 862 ctatactggggtatataaagtttgcaagtccaatgggcctctttttc 908
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1109
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1099
Effective search space: 767102
Effective search space used: 767102
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no521_o16.g1 MSMg01no521_o16.g1 CHROMAT_FILE:
MSMg01no521_o16.g1 PHD_FILE: MSMg01no521_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:23 2005
(613 letters)
>mm_chr1_3981932_3982945
Length = 1014
Score = 1058 bits (547), Expect = 0.0
Identities = 599/621 (96%), Gaps = 13/621 (2%)
Strand = Plus / Minus
Query: 1 aacctacaaaccatgttgaccgtaaactcagagattcac------ctgcctctgcctctg 54
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 907 aacctacaaaccatgttgaccgtaaactcagagattcacctgcctctgcctctgcctctg 848
Query: 55 ctgggattaaaggtgtgcatcaccaccatctgg-ctacgaaatagattttaatggttgaa 113
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 847 ctgggattaaaggtgtgcatcaccaccatctggtc-acgaaatagattttaatggttgaa 789
Query: 114 tgtctatatgtggttctccctgctggctgcctgtggaaaaaagaagtgacatttttattc 173
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 788 tgtctatatgtggttctccctgctggctgcctgtggaaaaaagaagtgacacttttattc 729
Query: 174 agaaacctgccactttgcactcgtg---aaaaaaaaagtgagagacaatgtagagacaca 230
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 728 agaaacctgccactttgcactcgtgaaaaaaaaaaaagtgagagacaat-tagagacaca 670
Query: 231 agcaaaaagagagtttgacccattccataagtgggtctacgacaagatggagttaagatt 290
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 669 agcaaaaagagagtttgacccattccataagtgggtctacgagaagatggagttaagatt 610
Query: 291 gatttaatatgatggatggacatgctacctcagtcaatagcttaaagtgatggagcaatg 350
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gatttaatctgatggatggacatgctacctcagtcaatagcttaaagtgatggagcaatg 550
Query: 351 gcagagggatcctgagatgatagttctagtgcatgtccattcaaagctgggaaactgatg 410
|||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct: 549 gcagagggatcctgggatgatagttctagtgcgtatccattcaaagctgagaaactgatg 490
Query: 411 ccagtaggggtaatggtaccacaggatgatgcaattcttttgtggttttaatttatacat 470
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccagta-gggtaatggtaccaaaggatgatgcaattcttttgtggttttaatttatacat 431
Query: 471 ttgtagtacaatgcaaattgtcctttaacataaggagaggttgtcagagaattttccaaa 530
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttggagtacaatgcaaattgtcctttaacataaggagaggttgtcagagaattttccaaa 371
Query: 531 ggtaggtttgctgtttaattatcaaatactgataatacatttgaatagtcatttaagtta 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggtaggtttgctgtttaattatcaaatactgataatacatttgaatagtcatttaagtta 311
Query: 591 gttttaaaagcaaagaaactg 611
|||||||||||||||||||||
Sbjct: 310 gttttaaaagcaaagaaactg 290
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1014
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1004
Effective search space: 605412
Effective search space used: 605412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
