BAC Information

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BAC

Clone NameMSMg01-521P04
Chromosome1 (Build37)
Map Location 103,600,121 - 103,600,380
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521P04.T7 (MSMg01no521_p04.b1)MSMg01-521P04.TJ (MSMg01no521_p04.g1)
ACCAG592622AG592623
length746745
length of high quality
(start - end)
260 (195 - 454)587 (82 - 668)
definitionCHROMAT_FILE: MSMg01no521_p04.b1 PHD_FILE: MSMg01no521_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:25 2005CHROMAT_FILE: MSMg01no521_p04.g1 PHD_FILE: MSMg01no521_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTCTTTTTAATTGCTGTTGTTTTACCACTCTTTATTTTCCGAGGATC
CGCGGAATTCTCTAAAGGATCCCCGATACTTGATGATCCCTGACAGATGA
TAATTAATCTGAAGCTAAATATCACAGAAAACTGAGATCACTGCCATGCC
AATTCTCCTCTATCACATCTTTGATGTAGGGCAAGTCACTTGACCTGCCA
AAATGATCTTATCCATAAGATAAATAGTTATGACAGAGAATTTGATCACA
CTTAACACAAAGTTGAAGCTAATATATTTTAAACATTATTATTCGGTACT
TTACACAGTGATTATAATGAAAGTCTGTGGACCACCACTATTACAGTGAA
CCATGATAAACAATTAGAAGTAAAAATATAACTTTTTCACAGTCATACAA
AAGGGTTACTTTCATTTATATTACACGTTATTCTTGAACATTCTTATATC
ACTTTCACAAAAATTTTCACCTGAAGTGATATCCCTTTGCAGCACAGTTC
ACCACACTCTCATCAGATGTTTCCTTCATGCCCATTGAGCACAATCTGAC
ATTATTTCTATTTTGGACTGTGGAATCAAACTCATAGAGACATATAGCGA
GAGAGATAATTACTCACACTCACTCTCCCACACATTACTTCCTCCTTCAG
AGATCATTAATATCTCCCAATATTTTTGGTCTTAACTCTCTCATATAAAG
ACACCGGTTAAAAAATATGTATGCTCCCATTAAATTTCTTTTATTC
NCTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAACACCTGAAAAAGTGTTCAGCTTCCTTAATCATCAGGGAA
ATGCAAATCAAAAAAAAAAAAAAAAAACCTGAGATTCCATCTCACACCAG
TCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGA
TGTGGAGAAAGAGGAACACTCCTCCACTGATGGTGGCATTGCAAGCTTGT
ACAACCACTCTGGAAATCAGTCTGGCAGTTTCTCAGAAAATTGGACATGG
TACTACCAGAGGATCCCGCAATACCTCTCTTGGGCATATATCCAGAAGAT
GCCCCAACTGCTTAAGAAAGAATCATGCCCCACTATGTTCATAGCATCCT
TATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCACTCAACAGAG
GAATGGATACAAAAAATGTGGTACATTTATACAATGGATTACTACTCAGC
TATTTATGTAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATTATTTTG
AGTGAGTTAACCCAATCACAAAAGAACTCAAATAATATGTACTCACTGAT
AAGTGGATATTAGCCCAGAAACGTACAATACCCATGATATAAGTTACAAT
TTATTAAAACACATGACACTCAAGAAAAACGAAGATCATAGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_p04.b1 MSMg01no521_p04.b1 CHROMAT_FILE:
MSMg01no521_p04.b1 PHD_FILE: MSMg01no521_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:25 2005
         (260 letters)



>mm_chr1_103599921_103600580
          Length = 660

 Score =  480 bits (248), Expect = e-140
 Identities = 257/260 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgccaaaatgatcttatccataagataaatagttatgacagagaatttgatcacactta 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctgccaaaatggtcttatccataagataaatagttatgacagagaatttgatcacactta 401

                                                                       
Query: 61  acacaaagttgaagctaatatattttaaacattattattcggtactttacacagtgatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 acacaaagttgaagctaatatattttaaacattattattcggtactttacacagtgatta 341

                                                                       
Query: 121 taatgaaagtctgtggaccaccactattacagtgaaccatgataaacaattagaagtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 taatgaaagtctgtggaccaccactattacagtgaaccatgataaacaattagaagtaaa 281

                                                                       
Query: 181 aatataactttttcacagtcatacaaaagggttactttcatttatattacacgttattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 280 aatataactttttcacagtcatacaaaagggttactttcatttatattacatgtaattct 221

                               
Query: 241 tgaacattcttatatcactt 260
           ||||||||||||||||||||
Sbjct: 220 tgaacattcttatatcactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)